SSTP_0000144900 (Strongyloides stercoralis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 SSTP_0000144900 T157326_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.768 0.772
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.768 0.772
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.768 0.772
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.768 0.772
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.766 0.746
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.766 0.746
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.766 0.746
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.766 0.746
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.765 0.763
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.765 0.763
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.765 0.763
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.761 0.728
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.761 0.728
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.761 0.728
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SSTP_0000144900.1 C2H2 ZF 194 216
SSTP_0000144900.1 C2H2 ZF 225 247
SSTP_0000144900.1 C2H2 ZF 251 273
SSTP_0000144900.1 C2H2 ZF 279 301
SSTP_0000144900.1 C2H2 ZF 307 328

Links

Other C2H2 ZF family TFs
Other Strongyloides stercoralis TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla018179 Citrullus lanatus Cla018179 N 0.000
PK20526.1 Cannabis sativa PK20526.1 N 0.000
SapurV1A.0001s1700 Salix purpurea SapurV1A.0001s1700 N 0.000
orange1.1g004514m.g Citrus sinensis orange1.1g004514m.g N 0.000
Lus10024384.g Linum usitatissimum Lus10024384.g N 0.000
Eucgr.A01279 Eucalyptus grandis Eucgr.A01279 N 0.000
Ciclev10011141m.g Citrus clementina Ciclev10011141m.g N 0.000
mgf011165m Mimulus guttatus mgf011165m N 0.000
Cucsa.175500 Cucumis sativus Cucsa.175500 N 0.000
cassava2361.valid.m1 Manihot esculenta cassava2361.valid.m1 N 0.000
29767.m000200 Ricinus communis 29767.m000200 N 0.000
Pm002685 Prunus mume Pm002685 N 0.000
GLYMA03G10320 Glycine max GLYMA03G10320 N 0.000
Ca_21138 Cicer arietinum Ca_21138 N 0.000
VIT_08s0007g00510 Vitis vinifera VIT_08s0007g00510 N 0.000
TCM_021920 Theobroma cacao TCM_021920 N 0.000
PRUPE_ppa001883mg Prunus persica PRUPE_ppa001883mg N 0.000
POPTR_0006s08690 Populus trichocarpa POPTR_0006s08690 N 0.000
PGSC0003DMG400019200 Solanum tuberosum PGSC0003DMG400019200 N 0.000
PGSC0003DMG400008904 Solanum tuberosum PGSC0003DMG400008904 N 0.000
MTR_7g062120 Medicago truncatula MTR_7g062120 N 0.000
GLYMA18G39920 Glycine max GLYMA18G39920 N 0.000
GLYMA07G15950 Glycine max GLYMA07G15950 N 0.000