CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm002685
(
Prunus mume
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pm002685
T201954_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm002685
GRAS
377
748
LRTLLISCAQAVAADDHRSANELLKKVRQHSSPFGDGTQRLAHCLADGLEARLAGTGSQIYKALVSKRTSAADFLKAHHLYLAASPFKKISNFVSNKTIMNLAQNATRVHVIDFGILYGFQWPTLIQRISWRDGGPPRLRITGIEFPQPGFRPAERVEETGRRLAAYAEKFNVPFEYNAIAKNWDTIKLEELKIDRDEVLVVNFLYRGKNLLDESVAVDSPRNRVLDLIRRINPDLFIHGIVNGAFNAPFFVTRFREALFHFSSLFDMLETVVPREDQERMLIETEIFGREALNVIACEGWERVERPETYKQWQVRNLRAGFVQLPLDRGLVKRAGEKVRSGYHKDFVIDEDSRWLLQGWKGRTVYALSTWK
Links
Other
GRAS
family TFs
Other
Prunus mume
TFs
71 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PRUPE_ppa001883mg
Prunus persica
PRUPE_ppa001883mg
N
0.989
gene18433-v1.0-hybrid
Fragaria vesca
gene18433-v1.0-hybrid
N
0.826
orange1.1g004514m.g
Citrus sinensis
orange1.1g004514m.g
N
0.822
Ciclev10011141m.g
Citrus clementina
Ciclev10011141m.g
N
0.819
SapurV1A.0001s1700
Salix purpurea
SapurV1A.0001s1700
N
0.811
Cucsa.175500
Cucumis sativus
Cucsa.175500
N
0.805
POPTR_0006s08690
Populus trichocarpa
POPTR_0006s08690
N
0.803
GLYMA03G10320
Glycine max
GLYMA03G10320
N
0.800
Cla018179
Citrullus lanatus
Cla018179
N
0.800
VIT_08s0007g00510
Vitis vinifera
VIT_08s0007g00510
N
0.792
Ca_21138
Cicer arietinum
Ca_21138
N
0.792
MTR_7g062120
Medicago truncatula
MTR_7g062120
N
0.789
Eucgr.A01279
Eucalyptus grandis
Eucgr.A01279
N
0.786
PK20526.1
Cannabis sativa
PK20526.1
N
0.786
TCM_021920
Theobroma cacao
TCM_021920
N
0.784
cassava2361.valid.m1
Manihot esculenta
cassava2361.valid.m1
N
0.784
PGSC0003DMG400008904
Solanum tuberosum
PGSC0003DMG400008904
N
0.781
Solyc09g010920.1
Solanum lycopersicum
Solyc09g010920.1
N
0.781
Lus10024384.g
Linum usitatissimum
Lus10024384.g
N
0.781
GLYMA07G15950
Glycine max
GLYMA07G15950
N
0.778
PGSC0003DMG400019200
Solanum tuberosum
PGSC0003DMG400019200
N
0.776
GLYMA18G39920
Glycine max
GLYMA18G39920
N
0.775
29767.m000200
Ricinus communis
29767.m000200
N
0.775
Gorai.011G266200
Gossypium raimondii
Gorai.011G266200
N
0.762
Solyc10g086530.1
Solanum lycopersicum
Solyc10g086530.1
N
0.751
mgf011165m
Mimulus guttatus
mgf011165m
N
0.751
orange1.1g004488m.g
Citrus sinensis
orange1.1g004488m.g
N
0.751
Ciclev10030787m.g
Citrus clementina
Ciclev10030787m.g
N
0.749
Aquca_009_00954
Aquilegia coerulea
Aquca_009_00954
N
0.746
TCM_042705
Theobroma cacao
TCM_042705
N
0.743
27568.m000253
Ricinus communis
27568.m000253
N
0.743
SapurV1A.0451s0060
Salix purpurea
SapurV1A.0451s0060
N
0.741
cassava31335.valid.m1
Manihot esculenta
cassava31335.valid.m1
N
0.735
Gorai.007G376400
Gossypium raimondii
Gorai.007G376400
N
0.735
SCL9
Arabidopsis thaliana
AT2G37650
N
0.730
POPTR_0008s05750
Populus trichocarpa
POPTR_0008s05750
N
0.730
Bostr.23794s0312
Boechera stricta
Bostr.23794s0312
N
0.730
Bra000012
Brassica rapa
Bra000012
N
0.727
Thhalv10016318m.g
Eutrema salsugineum
Thhalv10016318m.g
N
0.727
Bo3g031890
Brassica oleracea
Bo3g031890
N
0.724
Cagra.18121s0006
Capsella grandiflora
Cagra.18121s0006
N
0.723
Carubv10025657m.g
Capsella rubella
Carubv10025657m.g
N
0.723
Si034417m.g
Setaria italica
Si034417m.g
N
0.722
GRMZM2G098784
Zea mays
GRMZM2G098784
N
0.719
Gorai.010G201000
Gossypium raimondii
Gorai.010G201000
N
0.719
GRMZM2G049159
Zea mays
GRMZM2G049159
N
0.716
OBART03G30260
Oryza barthii
OBART03G30260
N
0.716
OGLUM03G30480
Oryza glumaepatula
OGLUM03G30480
N
0.716
OMERI03G26460
Oryza meridionalis
OMERI03G26460
N
0.716
ONIVA03G31510
Oryza nivara
ONIVA03G31510
N
0.716
OPUNC03G27510
Oryza punctata
OPUNC03G27510
N
0.716
ORGLA03G0287000
Oryza glaberrima
ORGLA03G0287000
N
0.716
BGIOSGA010017
Oryza indica
BGIOSGA010017
N
0.714
OS03G0690600
Oryza sativa
OS03G0690600
N
0.714
evm.TU.supercontig_1.422
Carica papaya
evm.TU.supercontig_1.422
N
0.714
Lus10023404.g
Linum usitatissimum
Lus10023404.g
N
0.714
OB03G37330
Oryza brachyantha
OB03G37330
N
0.711
Sb01g039670
Sorghum bicolor
Sb01g039670
N
0.711
Pavir.J32327
Panicum virgatum
Pavir.J32327
N
0.711
OLONG_013585
Oryza longistaminata
OLONG_013585
N
0.710
LPERR03G24920
Leersia perrieri
LPERR03G24920
N
0.708
cassava15723.m1
Manihot esculenta
cassava15723.m1
N
0.708
Pavir.Ia03770
Panicum virgatum
Pavir.Ia03770
N
0.708
fgenesh1_pg.C_scaffold_4001848
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_4001848
N
0.707
PRUPE_ppa021438mg
Prunus persica
PRUPE_ppa021438mg
N
0.705
Pm018822
Prunus mume
Pm018822
N
0.705
Traes_5AL_9AE0ED26A
Triticum aestivum
Traes_5AL_9AE0ED26A
N
0.703
mgf014897m
Mimulus guttatus
mgf014897m
N
0.703
Eucgr.K03128
Eucalyptus grandis
Eucgr.K03128
N
0.703
Lus10040284.g
Linum usitatissimum
Lus10040284.g
N
0.703
Traes_4DS_050789E2A
Triticum aestivum
Traes_4DS_050789E2A
N
0.700