CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

CBG09413 *(Caenorhabditis briggsae)* DM
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00751 (DM)	IPR001275	CBG09413	T168902_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
CBG09413 M01924_2.00	Caenorhabditis briggsae	AATGTTTC	GAAACATT	PBM Weirauch et al.(2014) pTH8330	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
CBN06605 M01925_2.00	Caenorhabditis brenneri	NWGTWKN	NMWACWN	PBM Weirauch et al.(2014) pTH9247	0.966	0.979
CJA05633_CONSTRUCT M01936_2.00	PBM CONSTRUCTS	NWGTWDN	NHWACWN	PBM Weirauch et al.(2014) pTH9344	0.966	0.957
dmd-10 M00657_2.00	Caenorhabditis elegans	AWTGTTTC	GAAACAWT	PBM Narasimhan et al.(2015) pTH9142	0.966	0.979
WUBG_11979 M01922_2.00	Wuchereria bancrofti	ATGTWTCA	TGAWACAT	PBM Weirauch et al.(2014) pTH9296	0.952	0.851
Bm2567 M01923_2.00	Brugia malayi	NNNWGTTKHN	NDMAACWNNN	PBM Weirauch et al.(2014) pTH9246	0.952	0.851
dmd-3 M00658_2.00	Caenorhabditis elegans	NNWGTWDN	NHWACWNN	PBM Narasimhan et al.(2015) pTH10638	0.918	0.745
For this family, TFs with SR scores > 0.845* will likely have a similar motif*

Experimental Constructs

Motif ID	Domain	From	To	Sequence
M01924_2.00	DM	36	82	RVPNCQKCGQHGRKSRLKGHKRSCPFRECPCAKCAVVTERQKLMADQ

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
CBG09413	DM	36	82	RVPNCQKCGQHGRKSRLKGHKRSCPFRECPCAKCAVVTERQKLMADQ

Links
Other DM family TFs
Other *Caenorhabditis briggsae* TFs