Alligator_sinensis_CCG000393.1 (Alligator sinensis)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) Alligator_sinensis_CCG000393.1 T174795_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		1.000 1.000
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		1.000 1.000
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		1.000 1.000
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		1.000 1.000
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.975 0.975
EBF2
M10466_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_02 		0.975 0.975
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.975 0.975
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.975 0.975
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.825 0.825
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG000393.1 EBF1 1 40

Links

Other EBF1 family TFs
Other Alligator sinensis TFs

321 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GATA28 Arabidopsis thaliana AT1G51600 D
GATA24 Arabidopsis thaliana AT3G21175 D
OS06G0698900 Oryza sativa OS06G0698900 D
Ca_17522 Cicer arietinum Ca_17522 I
ORGLA06G0219100 Oryza glaberrima ORGLA06G0219100 I
VIT_09s0054g00440 Vitis vinifera VIT_09s0054g00440 I
TRIUR3_32095 Triticum urartu TRIUR3_32095 I
Traes_6DS_6268D31AE Triticum aestivum Traes_6DS_6268D31AE I
Traes_6BS_AB5909D02 Triticum aestivum Traes_6BS_AB5909D02 I
Traes_6AS_4106E8E28 Triticum aestivum Traes_6AS_4106E8E28 I
TCM_027858 Theobroma cacao TCM_027858 I
Si006750m.g Setaria italica Si006750m.g I
Sb10g028750 Sorghum bicolor Sb10g028750 I
PRUPE_ppa009709mg Prunus persica PRUPE_ppa009709mg I
POPTR_0010s25810 Populus trichocarpa POPTR_0010s25810 I
GATA17 Oryza sativa OS02G0148500 I
ORUFI06G28170 Oryza rufipogon ORUFI06G28170 I
ORUFI02G03830 Oryza rufipogon ORUFI02G03830 I
PDK_20s1879741g001 Phoenix dactylifera PDK_20s1879741g001 I
Cla015736 Citrullus lanatus Cla015736 I
Pm013048 Prunus mume Pm013048 I
Cucsa.359570 Cucumis sativus Cucsa.359570 I
Aquca_007_00522 Aquilegia coerulea Aquca_007_00522 I
Aquca_018_00034 Aquilegia coerulea Aquca_018_00034 I
Cagra.2346s0015 Capsella grandiflora Cagra.2346s0015 I
Carubv10009866m.g Capsella rubella Carubv10009866m.g I
Ciclev10027306m.g Citrus clementina Ciclev10027306m.g I
Eucgr.J03166 Eucalyptus grandis Eucgr.J03166 I
evm.TU.supercontig_155.28 Carica papaya evm.TU.supercontig_155.28 I
orange1.1g022728m.g Citrus sinensis orange1.1g022728m.g I
Pavir.Da00166 Panicum virgatum Pavir.Da00166 I
Pavir.Db00254 Panicum virgatum Pavir.Db00254 I
SapurV1A.0036s1170 Salix purpurea SapurV1A.0036s1170 I
Thhalv10020970m.g Eutrema salsugineum Thhalv10020970m.g I
PDK_20s1340921g001 Phoenix dactylifera PDK_20s1340921g001 I
BRADI1G33980 Brachypodium distachyon BRADI1G33980 I
GSMUA_Achr9G13870_001 Musa acuminata GSMUA_Achr9G13870_001 I
GSMUA_Achr7G08720_001 Musa acuminata GSMUA_Achr7G08720_001 I
GSMUA_Achr3G05620_001 Musa acuminata GSMUA_Achr3G05620_001 I
GSMUA_Achr10G06260_001 Musa acuminata GSMUA_Achr10G06260_001 I
GRMZM2G080509 Zea mays GRMZM2G080509 I
GRMZM2G058479 Zea mays GRMZM2G058479 I
GLYMA08G23720 Glycine max GLYMA08G23720 I
F775_08559 Aegilops tauschii F775_08559 I
LPERR02G03330 Leersia perrieri LPERR02G03330 I
Bra031258 Brassica rapa Bra031258 I
Bra023900 Brassica rapa Bra023900 I
Bo5g103560 Brassica oleracea Bo5g103560 I
Bo3g181450 Brassica oleracea Bo3g181450 I
Bo1g108240 Brassica oleracea Bo1g108240 I
BGIOSGA020596 Oryza indica BGIOSGA020596 I
BGIOSGA007539 Oryza indica BGIOSGA007539 I
OGLUM02G03560 Oryza glumaepatula OGLUM02G03560 I
OPUNC06G23830 Oryza punctata OPUNC06G23830 I
OPUNC02G02970 Oryza punctata OPUNC02G02970 I
ONIVA06G28780 Oryza nivara ONIVA06G28780 I
ONIVA02G03810 Oryza nivara ONIVA02G03810 I
OMERI06G26410 Oryza meridionalis OMERI06G26410 I
OMERI02G04610 Oryza meridionalis OMERI02G04610 I
OLONG_015069 Oryza longistaminata OLONG_015069 I
OGLUM06G27650 Oryza glumaepatula OGLUM06G27650 I
ORGLA02G0035000 Oryza glaberrima ORGLA02G0035000 I
OBART06G26250 Oryza barthii OBART06G26250 I
OBART02G03780 Oryza barthii OBART02G03780 I
OB06G33840 Oryza brachyantha OB06G33840 I
OB02G13220 Oryza brachyantha OB02G13220 I
MLOC_3107 Hordeum vulgare MLOC_3107 I
LPERR11G14110 Leersia perrieri LPERR11G14110 I
LPERR06G21800 Leersia perrieri LPERR06G21800 I