Pm014858 (Prunus mume)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Pm014858 T180990_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.886 0.886
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.886 0.886
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.705 0.705
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm014858 FAR1 76 163

Links

Other FAR1 family TFs
Other Prunus mume TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA004703 Oryza indica BGIOSGA004703 I
BRADI2G53495 Brachypodium distachyon BRADI2G53495 I
F775_23182 Aegilops tauschii F775_23182 I
OB01G44140 Oryza brachyantha OB01G44140 I
OBART01G35310 Oryza barthii OBART01G35310 I
OMERI01G32480 Oryza meridionalis OMERI01G32480 I
ONIVA01G40340 Oryza nivara ONIVA01G40340 I
ORGLA01G0291800 Oryza glaberrima ORGLA01G0291800 I
ORUFI01G38660 Oryza rufipogon ORUFI01G38660 I
OS01G0820700 Oryza sativa OS01G0820700 I
Traes_3AL_2297D6E18 Triticum aestivum Traes_3AL_2297D6E18 I
TRAES3BF081400030CFD_g Triticum aestivum TRAES3BF081400030CFD_g I
Traes_3DL_48F7A19D2 Triticum aestivum Traes_3DL_48F7A19D2 I
OPUNC01G34270 Oryza punctata OPUNC01G34270 N