Gorai.005G134200 (Gossypium raimondii)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Gorai.005G134200 T181495_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.911 0.911
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.911 0.911
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.700 0.700
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.005G134200.10 FAR1 84 186
Gorai.005G134200.11 FAR1 84 186
Gorai.005G134200.1 FAR1 84 186
Gorai.005G134200.2 FAR1 84 186
Gorai.005G134200.3 FAR1 84 186
Gorai.005G134200.4 FAR1 84 186
Gorai.005G134200.5 FAR1 84 186
Gorai.005G134200.6 FAR1 84 186
Gorai.005G134200.7 FAR1 84 186
Gorai.005G134200.8 FAR1 84 186
Gorai.005G134200.9 FAR1 84 186

Links

Other FAR1 family TFs
Other Gossypium raimondii TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AEPI009636 Anopheles epiroticus AEPI009636 N
YQE_03596 Dendroctonus ponderosae YQE_03596 N
Cflo_10942--XP_001121936.1_APIME Camponotus floridanus Cflo_10942--XP_001121936.1_APIME N
CLEC005025 Cimex lectularius CLEC005025 N
CLEC005028 Cimex lectularius CLEC005028 N
HHAL000145-PA Halyomorpha halys HHAL000145-PA N
LCUP001485 Lucilia cuprina LCUP001485 N
LDEC003260 Leptinotarsa decemlineata LDEC003260 N
AATE011073 Anopheles atroparvus AATE011073 N
AATE011230 Anopheles atroparvus AATE011230 N
ACHR000032 Anopheles christyi ACHR000032 N
ACHR010096 Anopheles christyi ACHR010096 N
ACOM033895 Anopheles coluzzii ACOM033895 N
ACUA000836 Anopheles culicifacies ACUA000836 N
ACUA024277 Anopheles culicifacies ACUA024277 N
TC013857 Tribolium castaneum TC013857 N
AFAF002449 Anopheles farauti AFAF002449 N
AFAF002772 Anopheles farauti AFAF002772 N
AFUN010373 Anopheles funestus AFUN010373 N
AMAM000172 Anopheles maculatus AMAM000172 N
AMEC000479 Anopheles melas AMEC000479 N
AMEC003904 Anopheles melas AMEC003904 N
AMEM008406 Anopheles merus AMEM008406 N
AMIN002198 Anopheles minimus AMIN002198 N
AQUA006477 Anopheles quadriannulatus AQUA006477 N
ASIS012990 Anopheles sinensis ASIS012990 N
LLOJ002004 Lutzomyia longipalpis LLOJ002004 N
MDOA009050 Musca domestica MDOA009050 N
PPAI008603 Phlebotomus papatasi PPAI008603 N
GL13850 Drosophila persimilis FBgn0151455 N
AAEL001347 Aedes aegypti AAEL001347 N
ACEP15165 Atta cephalotes ACEP15165 N
ADAC008697 Anopheles darlingi ADAC008697 N
ADAC009393 Anopheles darlingi ADAC009393 N
AGAP012950 Anopheles gambiae AGAP012950 N
BGIBMGA007797 Bombyx mori BGIBMGA007797 N
CPIJ015425 Culex quinquefasciatus CPIJ015425 N
DAPPUDRAFT_9525 Daphnia pulex DAPPUDRAFT_9525 N
CG4374 Drosophila melanogaster FBgn0039078 N
GA18142 Drosophila pseudoobscura FBgn0078150 N
GF18765 Drosophila ananassae FBgn0095782 N
GG12435 Drosophila erecta FBgn0104723 N
GI10710 Drosophila mojavensis FBgn0133474 N
CpipJ_CPIJ015425 Culex pipiens CpipJ_CPIJ015425 N
GM23566 Drosophila sechellia FBgn0178432 N
GD18382 Drosophila simulans FBgn0189909 N
GJ23125 Drosophila virilis FBgn0210227 N
GK13158 Drosophila willistoni FBgn0215167 N
GE23956 Drosophila yakuba FBgn0241098 N
GB52523 Apis mellifera GB52523 N
HMEL006238 Heliconius melpomene HMEL006238 N
KGM_19023 Danaus plexippus KGM_19023 N
L798_13006 Zootermopsis nevadensis L798_13006 N
MCINX016666 Melitaea cinxia MCINX016666 N
NV22259 Nasonia vitripennis NV22259 N
PHUM535390 Pediculus humanus PHUM535390 N
SINV21477 Solenopsis invicta SINV21477 N