SMRZ_0001689701 (Schistosoma margrebowiei)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03615 (GCM) IPR003902 SMRZ_0001689701 T198259_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.664 0.664
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.664 0.664
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.664 0.664
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.664 0.664
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMRZ_0001689701-mRNA-1 GCM 248 385

Links

Other GCM family TFs
Other Schistosoma margrebowiei TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HPLM_0001799301 Haemonchus placei HPLM_0001799301 I
TELCIR_03315 Teladorsagia circumcincta TELCIR_03315 I
SMUV_0000808801 Syphacia muris SMUV_0000808801 I
DME_0000089401 Dracunculus medinensis DME_0000089401 I
DICVIV_07866 Dictyocaulus viviparus DICVIV_07866 I
ANCCAN_20966 Ancylostoma caninum ANCCAN_20966 I
CRE05176 Caenorhabditis remanei CRE05176 I
L892_g4460 Steinernema scapterisci L892_g4460 N
TCNE_0001371701 Toxocara canis TCNE_0001371701 N
TCLT_0000932101 Thelazia callipaeda TCLT_0000932101 N
WBGene00246765 Onchocerca volvulus WBGene00246765 N
MhA1_Contig131.frz3.gene12 Meloidogyne hapla MhA1_Contig131.frz3.gene12 N
maker-nMf.1.1.scaf14853-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf14853-snap-gene-0.4 N
L898_g139 Steinernema monticolum L898_g139 N
L893_g18186 Steinernema glaseri L893_g18186 N
ALUE_0001936401 Ascaris lumbricoides ALUE_0001936401 N
L889_g12838 Steinernema feltiae L889_g12838 N
L596_g3695 Steinernema carpocapsae L596_g3695 N
Bm6751 Brugia malayi Bm6751 N
Minc08811 Meloidogyne incognita Minc08811 N
ALUE_0001388001 Ascaris lumbricoides ALUE_0001388001 N
BXY_1758300 Bursaphelenchus xylophilus BXY_1758300 N
BTMF_0000069401 Brugia timori BTMF_0000069401 N
ASU_12809 Ascaris suum ASU_12809 N