CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo01118s010
(
Brassica oleracea
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Bo01118s010
T199912_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo01118s010.1
GRAS
375
746
LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTSAADMLKAYQTYISVCPFKKAAIIFANHSIMRLTANADTIHIVDFGISYGFQWPALIHRLSFRPGGPPKLRITGIELPQRGFRPAEGVHETGLRLARYCQRYKVPFEYNAIAQKWETIRVEDLKIEQGEFVVVNSLFRFKNLLDETVVVNSPRDAVLKLIRKANPSVFIQAVLSGSYNAPFFVTRFREALFHYSALFDMCDSKLAREDEMRLMFEKEFYGREIMNVVACEGTERVERPETYKQWQARVIRAGFKQLPLEKELMQNLKLKIENGYDKNFDIDQDGNWLLQGWKGRIVYASSVWV
Links
Other
GRAS
family TFs
Other
Brassica oleracea
TFs
32 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
28650.m000191
Ricinus communis
28650.m000191
N
0.735
Thhalv10016312m.g
Eutrema salsugineum
Thhalv10016312m.g
N
0.816
Thhalv10006868m.g
Eutrema salsugineum
Thhalv10006868m.g
N
0.951
SapurV1A.4599s0010
Salix purpurea
SapurV1A.4599s0010
N
0.730
SapurV1A.0041s0160
Salix purpurea
SapurV1A.0041s0160
N
0.719
SapurV1A.0040s0470
Salix purpurea
SapurV1A.0040s0470
N
0.727
Lus10016521.g
Linum usitatissimum
Lus10016521.g
N
0.700
evm.TU.supercontig_81.126
Carica papaya
evm.TU.supercontig_81.126
N
0.735
evm.TU.supercontig_81.124
Carica papaya
evm.TU.supercontig_81.124
N
0.708
Carubv10024938m.g
Capsella rubella
Carubv10024938m.g
N
0.803
Carubv10008391m.g
Capsella rubella
Carubv10008391m.g
N
0.908
Cagra.3264s0006
Capsella grandiflora
Cagra.3264s0006
N
0.800
Cagra.1671s0373
Capsella grandiflora
Cagra.1671s0373
N
0.908
Bostr.27991s0167
Boechera stricta
Bostr.27991s0167
N
0.800
Bostr.25219s0207
Boechera stricta
Bostr.25219s0207
N
0.914
cassava19450.valid.m1
Manihot esculenta
cassava19450.valid.m1
N
0.738
SCL14
Arabidopsis thaliana
AT1G07530
N
0.919
Pm000719
Prunus mume
Pm000719
N
0.730
Ca_16678
Cicer arietinum
Ca_16678
N
0.738
TCM_041815
Theobroma cacao
TCM_041815
N
0.714
PRUPE_ppa003149mg
Prunus persica
PRUPE_ppa003149mg
N
0.730
POPTR_0009s03790
Populus trichocarpa
POPTR_0009s03790
N
0.738
POPTR_0001s24850
Populus trichocarpa
POPTR_0001s24850
N
0.719
MTR_4g064160
Medicago truncatula
MTR_4g064160
N
0.714
GLYMA12G06670
Glycine max
GLYMA12G06670
N
0.727
GLYMA11G14750
Glycine max
GLYMA11G14750
N
0.716
Bra035653
Brassica rapa
Bra035653
N
0.738
Bra030688
Brassica rapa
Bra030688
N
0.992
Bra028390
Brassica rapa
Bra028390
N
0.797
Bo4g168030
Brassica oleracea
Bo4g168030
N
0.735
Bo4g065860
Brassica oleracea
Bo4g065860
N
0.799
SCL33
Arabidopsis thaliana
AT2G29060
N
0.786