AMTR_s00048p00089530 (Amborella trichopoda)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 AMTR_s00048p00089530 T204391_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.797 0.754
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.797 0.754
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.787 0.737
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.785 0.737
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.785 0.737
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.781 0.719
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.781 0.719
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.771 0.702
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.771 0.702
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.770 0.614
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.765 0.737
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.765 0.737
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.765 0.737
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.723 0.632
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.723 0.632
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN15523 Homeodomain 88 144

Links

Other Homeodomain family TFs
Other Amborella trichopoda TFs

610 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT2G01818 Arabidopsis thaliana AT2G01818 D
Bo2g134600 Brassica oleracea Bo2g134600 I
PK02661.1 Cannabis sativa PK02661.1 I
Thhalv10005480m.g Eutrema salsugineum Thhalv10005480m.g I
SapurV1A.0055s0220 Salix purpurea SapurV1A.0055s0220 I
SapurV1A.0015s0650 Salix purpurea SapurV1A.0015s0650 I
MDP0000290118 Malus domestica MDP0000290118 I
Lus10030763.g Linum usitatissimum Lus10030763.g I
Lus10013242.g Linum usitatissimum Lus10013242.g I
Gorai.013G029900 Gossypium raimondii Gorai.013G029900 I
Gorai.008G170500 Gossypium raimondii Gorai.008G170500 I
Gorai.005G152700 Gossypium raimondii Gorai.005G152700 I
evm.TU.supercontig_2.160 Carica papaya evm.TU.supercontig_2.160 I
Eucgr.G02080 Eucalyptus grandis Eucgr.G02080 I
Carubv10017978m.g Capsella rubella Carubv10017978m.g I
Cagra.2235s0037 Capsella grandiflora Cagra.2235s0037 I
cassava20325.m1 Manihot esculenta cassava20325.m1 I
29968.m000644 Ricinus communis 29968.m000644 I
Pm005894 Prunus mume Pm005894 I
TCM_011266 Theobroma cacao TCM_011266 I
PRUPE_ppa011075mg Prunus persica PRUPE_ppa011075mg I
POPTR_0010s11410 Populus trichocarpa POPTR_0010s11410 I
POPTR_0008s13660 Populus trichocarpa POPTR_0008s13660 I
fgenesh2_kg.5__89__AT2G01818.1 Arabidopsis lyrata fgenesh2_kg.5__89__AT2G01818.1 I
Bo7g078820 Brassica oleracea Bo7g078820 I
Ciclev10016611m.g Citrus clementina Ciclev10016611m.g N
cassava40347.m1 Manihot esculenta cassava40347.m1 N
orange1.1g027579m.g Citrus sinensis orange1.1g027579m.g N