Bra013556 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra013556 T205089_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.865 0.965
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.865 0.965
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.855 0.965
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.855 0.965
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.841 0.807
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.825 0.789
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.825 0.789
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.804 0.754
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.804 0.754
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.804 0.702
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.786 0.772
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.786 0.772
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.786 0.772
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.744 0.737
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.744 0.737
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra013556.1-P Homeodomain 58 114

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

617 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RFX2 Homo sapiens ENSG00000087903 D
Rfx2 Mus musculus ENSMUSG00000024206 D
Rfx3 Mus musculus ENSMUSG00000040929 D
RFX2 Ornithorhynchus anatinus ENSOANG00000003796 D
RFX1 Tetraodon nigroviridis ENSTNIG00000003294 D
G4VLF2_SCHMA Schistosoma mansoni G4VLF2_SCHMA D
daf-19 Caenorhabditis elegans WBGene00000914 D
RFX1 Saccharomyces cerevisiae YLR176C D
Sjc_0102030 Schistosoma japonicum Sjc_0102030 D
AMAG_10999 Allomyces macrogynus AMAG_10999 I
AMAG_11601 Allomyces macrogynus AMAG_11601 I
CAOG_00356 Capsaspora owczarzaki CAOG_00356 I
CIMG_05985 Coccidioides immitis CIMG_05985 I
CLUG_05348 Candida lusitaniae CLUG_05348 I
CPAG_04140 Candida parapsilosis CPAG_04140 I
CpipJ_CPIJ004011 Culex pipiens CpipJ_CPIJ004011 I
MCYG_06867 Microsporum canis MCYG_06867 I
PGUG_04792 Candida guilliermondii PGUG_04792 I
SNOG_15366 Stagonospora nodorum SNOG_15366 I
VDBG_04171 Verticillium albo atrum VDBG_04171 I
A1O1_08600 Capronia coronata A1O1_08600 I
A1O3_08026 Capronia epimyces A1O3_08026 I
A1O5_04383 Cladophialophora psammophila A1O5_04383 I
A1O7_03561 Cladophialophora yegresii A1O7_03561 I
A1O9_03272 Exophiala aquamarina A1O9_03272 I
AACERI_AaceriAAL010W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAL010W I
AAEL018287 Aedes aegypti AAEL018287 I
ACRE_029400 Acremonium chrysogenum ACRE_029400 I
ACYPI000454 Acyrthosiphon pisum ACYPI000454 I
ACYPI002124 Acyrthosiphon pisum ACYPI002124 I
ADAC010162 Anopheles darlingi ADAC010162 I
AGOS_AAL010W Ashbya gossypii AGOS_AAL010W I
AOL_s00215g602 Arthrobotrys oligospora AOL_s00215g602 I
Aqu1.223787 Amphimedon queenslandica Aqu1.223787 I
ARB_07111 Arthroderma benhamiae ARB_07111 I
AUEXF2481DRAFT_78728 Aureobasidium subglaciale AUEXF2481DRAFT_78728 I
BAUCODRAFT_23427 Baudoinia compniacensis BAUCODRAFT_23427 I
BBA_07182 Beauveria bassiana BBA_07182 I
Bcin03g02360 Botrytis cinerea Bcin03g02360 I
BDDG_02784 Blastomyces dermatitidis BDDG_02784 I
BGHDH14_bgh05888 Blumeria graminis BGHDH14_bgh05888 I
BGIBMGA012712 Bombyx mori BGIBMGA012712 I
BN7_2967 Wickerhamomyces ciferrii BN7_2967 I
ACLA_009440 Aspergillus clavatus CADACLAG00001004 I
CADAFLAG00010851 Aspergillus flavus CADAFLAG00010851 I
AFUA_5G06120 Aspergillus fumigatus CADAFUAG00006202 I
CADANGAG00013568 Aspergillus niger CADANGAG00013568 I
ANIA_02296 Aspergillus nidulans CADANIAG00008989 I
CADAORAG00004061 Aspergillus oryzae CADAORAG00004061 I
ATEG_09416 Aspergillus terreus CADATEAG00008983 I
NFIA_036980 Neosartorya fischeri CADNFIAG00003299 I
CAGL0B04895g Candida glabrata CAGL0B04895g I
CAGL0H03751g Candida glabrata CAGL0H03751g I
CaO19.11346 Candida albicans CaO19.11346 I
CaO19.3865 Candida albicans CaO19.3865 I
CapteG168129 Capitella teleta CapteG168129 I
CD36_31600 Candida dubliniensis CD36_31600 I
CFIO01_07583 Colletotrichum fioriniae CFIO01_07583 I
CGGC5_15149 Colletotrichum gloeosporioides CGGC5_15149 I
CH063_09103 Colletotrichum higginsianum CH063_09103 I
CLUG_05348 Clavispora lusitaniae CLUG_05348 I
CMQ_5960 Grosmannia clavigera CMQ_5960 I
Cob_11986 Colletotrichum orbiculare Cob_11986 I
COCC4DRAFT_162970 Bipolaris maydis COCC4DRAFT_162970 I
COCCADRAFT_29061 Bipolaris zeicola COCCADRAFT_29061 I
COCMIDRAFT_23254 Bipolaris oryzae COCMIDRAFT_23254 I
COCSADRAFT_34318 Bipolaris sorokiniana COCSADRAFT_34318 I
COCVIDRAFT_40879 Bipolaris victoriae COCVIDRAFT_40879 I
CORT_0D05100 Candida orthopsilosis CORT_0D05100 I
CPC735_025690 Coccidioides posadasii CPC735_025690 I
CPIJ004011 Culex quinquefasciatus CPIJ004011 I
CPUR_03868 Claviceps purpurea CPUR_03868 I
CSUB01_01029 Colletotrichum sublineola CSUB01_01029 I
CTHT_0028340 Chaetomium thermophilum CTHT_0028340 I
CTRG_00624 Candida tropicalis CTRG_00624 I
DAPPUDRAFT_42744 Daphnia pulex DAPPUDRAFT_42744 I
DEHA2G10868g Debaryomyces hansenii DEHA2G10868g I
DI09_1p30 Microsporidia sp DI09_1p30 I
DI09_91p30 Microsporidia sp DI09_91p30 I
DOTSEDRAFT_132769 Dothistroma septosporum DOTSEDRAFT_132769 I
DRE_06212 Drechslerella stenobrocha DRE_06212 I
rfx1/2/3 Ciona intestinalis ENSCING00000009186 I
rfx3 Danio rerio ENSDARG00000014550 I
RFX2 Macaca mulatta ENSMMUG00000011967 I
ENSMPUG00000006329 Mustela putorius furo ENSMPUG00000006329 I
ENSPPYG00000009445 Pongo abelii ENSPPYG00000009445 I
ENSPSIG00000005029 Pelodiscus sinensis ENSPSIG00000005029 I
ENSPSIG00000016113 Pelodiscus sinensis ENSPSIG00000016113 I
Rfx2 Rattus norvegicus ENSRNOG00000045846 I
rfx3 Takifugu rubripes ENSTRUG00000013889 I
EPUS_04947 Endocarpon pusillum EPUS_04947 I
EURHEDRAFT_516724 Aspergillus ruber EURHEDRAFT_516724 I
EV44_g5273 Erysiphe necator EV44_g5273 I
F503_07504 Ophiostoma piceae uamh F503_07504 I
FFUJ_02499 Fusarium fujikuroi FFUJ_02499 I
FGRRES_07420 Fusarium graminearum FGRRES_07420 I
FOXG_01471 Fusarium oxysporum FOXG_01471 I
FPSE_09383 Fusarium pseudograminearum FPSE_09383 I
FVEG_07837 Fusarium verticillioides FVEG_07837 I
G210_0560 Candida maltosa G210_0560 I
G647_04815 Cladophialophora carrionii G647_04815 I
GGTG_07952 Gaeumannomyces graminis GGTG_07952 I
GLRG_03233 Colletotrichum graminicola GLRG_03233 I
GMDG_00789 Pseudogymnoascus destructans GMDG_00789 I
GNLVRS01_PISO0E08012g Millerozyma farinosa GNLVRS01_PISO0E08012g I
GNLVRS01_PISO0F09355g Millerozyma farinosa GNLVRS01_PISO0F09355g I
GSTUM_00005211001 Tuber melanosporum GSTUM_00005211001 I
H072_327 Dactylellina haptotyla H072_327 I
H101_06747 Trichophyton interdigitale H101_06747 I
H102_04304 Trichophyton rubrum H102_04304 I
H105_04329 Trichophyton soudanense H105_04329 I
HCBG_05483 Histoplasma capsulatum HCBG_05483 I
HelroG70386 Helobdella robusta HelroG70386 I
HMEL015479 Heliconius melpomene HMEL015479 I
HMPREF1120_04684 Exophiala dermatitidis HMPREF1120_04684 I
HMPREF1541_04667 Cyphellophora europaea HMPREF1541_04667 I
HMPREF1624_04412 Sporothrix schenckii HMPREF1624_04412 I
HPODL_00388 Ogataea parapolymorpha HPODL_00388 I
KAFR_0H03130 Kazachstania africana KAFR_0H03130 I
KAFR_0I02180 Kazachstania africana KAFR_0I02180 I
KGM_13721 Danaus plexippus KGM_13721 I
KLTH0H12144g Lachancea thermotolerans KLTH0H12144g I
KNAG_0I01300 Kazachstania naganishii KNAG_0I01300 I
Kpol_457p14 Vanderwaltozyma polyspora Kpol_457p14 I
LALA0_S03e09428g Lachancea lanzarotensis LALA0_S03e09428g I
LELG_03203 Lodderomyces elongisporus LELG_03203 I
LEMA_P019700.1 Leptosphaeria maculans LEMA_P019700.1 I
M437DRAFT_81253 Aureobasidium melanogenum M437DRAFT_81253 I
M438DRAFT_393589 Aureobasidium pullulans M438DRAFT_393589 I
MAC_02434 Metarhizium acridum MAC_02434 I
MAJ_05697 Metarhizium majus MAJ_05697 I
MAM_06665 Metarhizium album MAM_06665 I
MANI_023048 Metarhizium anisopliae MANI_023048 I
MAPG_07750 Magnaporthe poae MAPG_07750 I
MBM_03129 Marssonina brunnea MBM_03129 I
MBR_03889 Metarhizium brunneum MBR_03889 I
MCYG_06867 Arthroderma otae MCYG_06867 I
MGG_04000 Magnaporthe oryzae MGG_04000 I
MGU_07283 Metarhizium guizhouense MGU_07283 I
MGYG_03742 Microsporum gypseum MGYG_03742 I
MPH_13091 Macrophomina phaseolina MPH_13091 I
MYCFIDRAFT_10959 Pseudocercospora fijiensis MYCFIDRAFT_10959 I
Mycgr3G110369 Zymoseptoria tritici Mycgr3G110369 I
MYCTH_2301302 Myceliophthora thermophila MYCTH_2301302 I
NCAS_0C04880 Naumovozyma castellii NCAS_0C04880 I
NDAI_0G04240 Naumovozyma dairenensis NDAI_0G04240 I
NechaG49316 Fusarium solani NechaG49316 I
NEMVEDRAFT_v1g96414 Nematostella vectensis NEMVEDRAFT_v1g96414 I
NEUTE1DRAFT_119738 Neurospora tetrasperma NEUTE1DRAFT_119738 I
OCS_02678 Ophiocordyceps sinensis OCS_02678 I
OIDMADRAFT_184073 Oidiodendron maius OIDMADRAFT_184073 I
PAAG_00480 Paracoccidioides sp lutzii PAAG_00480 I
PABG_06744 Paracoccidioides brasiliensis PABG_06744 I
PAS_chr2-2_0153 Komagataella pastoris PAS_chr2-2_0153 I
PCH_Pc20g01690 Penicillium rubens PCH_Pc20g01690 I
PDE_02161 Penicillium oxalicum PDE_02161 I
PDIP_47410 Penicillium digitatum PDIP_47410 I
PEX1_087840 Penicillium expansum PEX1_087840 I
PFICI_07890 Pestalotiopsis fici PFICI_07890 I
PGTG_11391 Puccinia graminis PGTG_11391 I
PGUG_04792 Meyerozyma guilliermondii PGUG_04792 I
PHUM236330 Pediculus humanus PHUM236330 I
PICST_78645 Scheffersomyces stipitis PICST_78645 I
PITC_028740 Penicillium italicum PITC_028740 I
PMAA_084960 Talaromyces marneffei PMAA_084960 I
PNEG_02893 Pneumocystis murina PNEG_02893 I
PODANS_2_5740 Podospora anserina PODANS_2_5740 I
PTRG_01267 Pyrenophora triticirepentis PTRG_01267 I
PTT_09109 Pyrenophora teres PTT_09109 I
PV04_03763 Capronia semiimmersa PV04_03763 I
PV05_05335 Exophiala xenobiotica PV05_05335 I
PV06_00023 Exophiala oligosperma PV06_00023 I
PV07_06647 Cladophialophora immunda PV07_06647 I
PV08_04071 Exophiala spinifera PV08_04071 I
PV09_00065 Verruconis gallopava PV09_00065 I
PV10_05596 Exophiala mesophila PV10_05596 I
PV11_01295 Exophiala sideris PV11_01295 I
PVAR5_6603 Byssochlamys spectabilis PVAR5_6603 I
S40285_05794 Stachybotrys chlorohalonata S40285_05794 I
S40288_01173 Stachybotrys chartarum S40288_01173 I
SAPIO_CDS9685 Scedosporium apiospermum SAPIO_CDS9685 I
SBOR_6602 Sclerotinia borealis SBOR_6602 I
SEPMUDRAFT_46603 Sphaerulina musiva SEPMUDRAFT_46603 I
SETTUDRAFT_147537 Setosphaeria turcica SETTUDRAFT_147537 I
SJAG_04839 Schizosaccharomyces japonicus SJAG_04839 I
SMAC_06634 Sordaria macrospora SMAC_06634 I
Smp_170910 Schistosoma mansoni Smp_170910 I
SNOG_15366 Phaeosphaeria nodorum SNOG_15366 I
SOCG_01623 Schizosaccharomyces octosporus SOCG_01623 I
sak1 Schizosaccharomyces pombe SPAC3G9.14 I
SPAPADRAFT_70246 Spathaspora passalidarum SPAPADRAFT_70246 I
SPBR_05608 Sporothrix brasiliensis SPBR_05608 I
SPOG_03909 Schizosaccharomyces cryophilus SPOG_03909 I
SS1G_00575 Sclerotinia sclerotiorum SS1G_00575 I
TBLA_0C01490 Tetrapisispora blattae TBLA_0C01490 I
TDEL_0B05980 Torulaspora delbrueckii TDEL_0B05980 I
TEQG_02965 Trichophyton equinum TEQG_02965 I
TESG_00180 Trichophyton tonsurans TESG_00180 I
THITE_2107553 Thielavia terrestris THITE_2107553 I
TPHA_0B03750 Tetrapisispora phaffii TPHA_0B03750 I
TRIATDRAFT_83492 Trichoderma atroviride TRIATDRAFT_83492 I
TRIREDRAFT_69349 Trichoderma reesei TRIREDRAFT_69349 I
TRIVIDRAFT_34449 Trichoderma virens TRIVIDRAFT_34449 I
TRV_04907 Trichophyton verrucosum TRV_04907 I
TSTA_119980 Talaromyces stipitatus TSTA_119980 I
U727_0043066021 Penicillium solitum U727_0043066021 I
UCRPA7_1505 Togninia minima UCRPA7_1505 I
UREG_04378 Uncinocarpus reesii UREG_04378 I
UV8b_7132 Ustilaginoidea virens UV8b_7132 I
V499_05779 Pseudogymnoascus pannorum V499_05779 I
VDAG_01397 Verticillium dahliae VDAG_01397 I
VDBG_04171 Verticillium alfalfae VDBG_04171 I
VHEMI10038 Torrubiella hemipterigena VHEMI10038 I
W97_05844 Coniosporium apollinis W97_05844 I
X797_002751 Metarhizium robertsii X797_002751 I
YALI0_E13596g Yarrowia lipolytica YALI0_E13596g I
Z517_10332 Fonsecaea pedrosoi Z517_10332 I
Z518_01660 Rhinocladiella mackenziei Z518_01660 I
ZBAI_03427 Zygosaccharomyces bailii ZBAI_03427 I
ZBAI_08430 Zygosaccharomyces bailii ZBAI_08430 I
ZYRO0E04642g Zygosaccharomyces rouxii ZYRO0E04642g I
Aan_R008768 Calypte anna Aan_R008768 I
Brh_R000260 Buceros rhinoceros Brh_R000260 I
Cmyd_10003770 Chelonia mydas Cmyd_10003770 I
Myotis_brandtii_Rfx2_10010595 Myotis brandtii Myotis_brandtii_Rfx2_10010595 I
Ogr17805 Ophisaurus gracilis Ogr17805 I
e_gw1.6.922.1 Nectria haematococca e_gw1.6.922.1 I
estExt_fgenesh1_pg.C_chr_80140 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_80140 I
estExt_fgenesh2_pg.C_10713 Neurospora discreta estExt_fgenesh2_pg.C_10713 I
estExt_fgenesh2_pg.C_4710022 Branchiostoma floridae estExt_fgenesh2_pg.C_4710022 I
estExt_genewise1_worm.C_chr_6.10133 Pichia stipitis estExt_genewise1_worm.C_chr_6.10133 I
fgeneshMC_pg.6_#_740 Mucor circinelloides fgeneshMC_pg.6_#_740 I
gw1.15.255.1 Mycosphaerella fijiensis gw1.15.255.1 I
LCUP000946 Lucilia cuprina LCUP000946 I
LCUP002873 Lucilia cuprina LCUP002873 I
NCU06701 Neurospora crassa NCU06701 I
PredSwiss_ASS2010_3110.1 Pneumocystis carinii PredSwiss_ASS2010_3110.1 I
PredSwiss_CON653.4 Pneumocystis carinii PredSwiss_CON653.4 I
Scas_Contig488.2 Saccharomyces castellii Scas_Contig488.2 I
SMU15029830 Schmidtea mediterranea SMU15029830 I
14959_Multiple Saccharomyces mikatae 14959_Multiple I
16177_Multiple Saccharomyces paradoxus 16177_Multiple I
AB07822.1 Alternaria brassicicola AB07822.1 I
fgenesh1_pg.00162_#_176 Aspergillus carbonarius fgenesh1_pg.00162_#_176 I
fgenesh1_pg.C_scaffold_1001176 Cryphonectria parasitica fgenesh1_pg.C_scaffold_1001176 I
fgeneshTM_pg.2_#_559 Tremella mesenterica fgeneshTM_pg.2_#_559 I
KLTH0H12144g Kluyveromyces thermotolerans KLTH0H12144g I
Kwal_214 Kluyveromyces waltii Kwal_214 I
Pc20g01690 Penicillium chrysogenum Pc20g01690 I
PMAA_084960 Penicillium marneffei PMAA_084960 I
SAKL0D08734g Lachancea kluyveri SAKL0D08734g I
XP_002492053.1 Pichia pastoris XP_002492053.1 I
AALB009562 Anopheles albimanus AALB009562 I
LLOJ001292 Lutzomyia longipalpis LLOJ001292 I
MDOA012518 Musca domestica MDOA012518 I
PPAI005117 Phlebotomus papatasi PPAI005117 I
csin108803 Clonorchis sinensis csin108803 I
DILT_0000443401 Diphyllobothrium latum DILT_0000443401 I
ECANG7_04993 Echinococcus canadensis ECANG7_04993 I
ECPE_0000690401 Echinostoma caproni ECPE_0000690401 I
HmN_000132600 Hymenolepis microstoma HmN_000132600 I
HNAJ_0000214001 Hymenolepis nana HNAJ_0000214001 I
MCOS_0000782401 Mesocestoides corti MCOS_0000782401 I
PXEA_0000511201 Protopolystoma xenopodis PXEA_0000511201 I
scaffold324-EXSNAP2012.23 Pristionchus exspectatus scaffold324-EXSNAP2012.23 I
T265_05437 Opisthorchis viverrini T265_05437 I
TASK_0000037701 Taenia asiatica TASK_0000037701 I
TRE_0000274301 Trichobilharzia regenti TRE_0000274301 I
TsM_000872000 Taenia solium TsM_000872000 I
TTAC_0000668301 Hydatigera taeniaeformis TTAC_0000668301 I
PAS_chr3_0071 Komagataella pastoris PAS_chr3_0071 N
Z519_02210 Cladophialophora bantiana Z519_02210 N
XP_002492279.1 Pichia pastoris XP_002492279.1 N