HOXC11 (Homo sapiens)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSG00000123388 T209824_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HOXC11
M03131_2.00		 Homo sapiens
NWTTWAYGAYH
DRTCRTWAAWN		 SELEX
Jolma et al.(2013)
HOXC11_1		 (Direct) (Direct)
HOXC11
M03132_2.00		 Homo sapiens
NWTTWATKRBH
DVYMATWAAWN		 SELEX
Jolma et al.(2013)
HOXC11_2		 (Direct) (Direct)
HOXC11
M03133_2.00		 Homo sapiens
DRTCGTWAAWN
NWTTWACGAYH		 SELEX
Jolma et al.(2013)
HOXC11_3		 (Direct) (Direct)
HOXC11
M03134_2.00		 Homo sapiens
NTTTTATKRBN
NVYMATAAAAN		 SELEX
Jolma et al.(2013)
HOXC11_4		 (Direct) (Direct)
HOXC11
M05075_2.00		 Homo sapiens
NDTTWACGAYN
NRTCGTWAAHN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_1		 (Direct) (Direct)
HOXC11
M05076_2.00		 Homo sapiens
NWTTWATKRCH
DGYMATWAAWN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_2		 (Direct) (Direct)
HOXC11
M05077_2.00		 Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_1		 (Direct) (Direct)
HOXC11
M05078_2.00		 Homo sapiens
NDTTTATKRSN
NSYMATAAAHN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_2		 (Direct) (Direct)
HOXC11
M05079_2.00		 Homo sapiens
NRTCGTWAAHN
NDTTWACGAYN		 SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_1		 (Direct) (Direct)
HOXC11
M05080_2.00		 Homo sapiens
NDTTWATKRSN
NSYMATWAAHN		 SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_2		 (Direct) (Direct)
HOXC11
M05081_2.00		 Homo sapiens
NRTCGTWAANN
NNTTWACGAYN		 SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_1		 (Direct) (Direct)
HOXC11
M05082_2.00		 Homo sapiens
NNTTWAYKRSN
NSYMRTWAANN		 SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_2		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hoxc11
M00390_2.00 		Mus musculus
NTTWAYDDBN
NVHHRTWAAN		 PBM
Berger et al.(2008)
Hoxc11_3718 		0.867 1.000
Hoxd11
M00493_2.00 		Mus musculus
DDDNNNNN
NNNNNHHH		 PBM
Berger et al.(2008)
Hoxd11_3873 		0.867 0.965
HOXD11
M03139_2.00 		Homo sapiens
RTCGTAAAWH
DWTTTACGAY		 SELEX
Jolma et al.(2013)
HOXD11_1 		0.867 0.965
HOXD11
M03140_2.00 		Homo sapiens
TTTWATKRBH
DVYMATWAAA		 SELEX
Jolma et al.(2013)
HOXD11_2 		0.867 0.965
HOXD11
M05120_2.00 		Homo sapiens
NRTCGTWAANNDTWAH
DTWAHNNTTWACGAYN		 SELEX
Yin et al.(2017)
HOXD11_eDBD_HT-SELEX 		0.867 0.965
HOXD11
M05121_2.00 		Homo sapiens
NRTCGTWAAHNDTWAH
DTWAHNDTTWACGAYN		 SELEX
Yin et al.(2017)
HOXD11_eDBD_Methyl-HT-SELEX 		0.867 0.965
Hoxa11
M00474_2.00 		Mus musculus
NNHNHNNNN
NNNNDNDNN		 PBM
Berger et al.(2008)
Hoxa11_2218 		0.867 0.947
Hoxa11
M03274_2.00 		Mus musculus
NNDTTWAYGABN
NVTCRTWAAHNN		 SELEX
Jolma et al.(2013)
Hoxa11_1 		0.867 0.947
Hoxa11
M03275_2.00 		Mus musculus
NDTTWATKRNN
NNYMATWAAHN		 SELEX
Jolma et al.(2013)
Hoxa11_2 		0.867 0.947
HOXA11
M04897_2.00 		Homo sapiens
VGTCGTAAAWH
DWTTTACGACB		 SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_1 		0.867 0.947
HOXA11
M04898_2.00 		Homo sapiens
DDTTWATKRSN
NSYMATWAAHH		 SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_2 		0.867 0.947
HOXA11
M04899_2.00 		Homo sapiens
NRTCGTAAAWH
DWTTTACGAYN		 SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_1 		0.867 0.947
HOXA11
M04900_2.00 		Homo sapiens
DYTTTATKRCH
DGYMATAAARH		 SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_2 		0.867 0.947
Hoxc10
M00421_2.00 		Mus musculus
TTWATKAB
VTMATWAA		 PBM
Berger et al.(2008)
Hoxc10_2779 		0.766 0.702
Hoxd10
M00509_2.00 		Mus musculus
NNNNNNNN
NNNNNNNN		 PBM
Berger et al.(2008)
Hoxd10_2368 		0.766 0.702
HOXC10
M03228_2.00 		Homo sapiens
DTTTWATKDB
VHMATWAAAH		 SELEX
Jolma et al.(2013)
HOXC10_1 		0.766 0.702
HOXC10
M03229_2.00 		Homo sapiens
NNTTWATKRB
VYMATWAANN		 SELEX
Jolma et al.(2013)
HOXC10_2 		0.766 0.702
HOXC10
M03230_2.00 		Homo sapiens
NWTTWAYGAB
VTCRTWAAWN		 SELEX
Jolma et al.(2013)
HOXC10_3 		0.766 0.702
Hoxc10
M03252_2.00 		Mus musculus
DTTTWAYGAY
RTCRTWAAAH		 SELEX
Jolma et al.(2013)
Hoxc10_1 		0.766 0.702
Hoxc10
M03253_2.00 		Mus musculus
DTTTWATKRY
RYMATWAAAH		 SELEX
Jolma et al.(2013)
Hoxc10_2 		0.766 0.702
HOXC10
M05335_2.00 		Homo sapiens
NDTTTATKRCN
NGYMATAAAHN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_1 		0.766 0.702
HOXC10
M05336_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_2 		0.766 0.702
HOXC10
M05339_2.00 		Homo sapiens
NTTTTATKRCN
NGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_1 		0.766 0.702
HOXC10
M05340_2.00 		Homo sapiens
NRTCGTAAAWN
NWTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_2 		0.766 0.702
HOXD10
M05112_2.00 		Homo sapiens
NKTTTATKRC
GYMATAAAMN		 SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_1 		0.766 0.702
HOXD10
M05113_2.00 		Homo sapiens
RTCGTAAAHN
NDTTTACGAY		 SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_2 		0.766 0.702
HOXD10
M05116_2.00 		Homo sapiens
RGTCGTAAAAH
DTTTTACGACY		 SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_1 		0.766 0.702
HOXD10
M05117_2.00 		Homo sapiens
RRYMATAAAAH
DTTTTATKRYY		 SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_2 		0.766 0.702
HOXD10
M10687_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD10_Q2 		0.766 0.702
HOXD10
M10688_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD10_Q6 		0.766 0.702
HOXC10
M05337_2.00 		Homo sapiens
NTTTTATKRCN
NGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_1 		0.766 0.702
HOXC10
M05338_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_2 		0.766 0.702
HOXC10
M05341_2.00 		Homo sapiens
DTTTTATKRCH
DGYMATAAAAH		 SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_1 		0.766 0.702
HOXC10
M05342_2.00 		Homo sapiens
VGTCGTAAAHN
NDTTTACGACB		 SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_2 		0.766 0.702
HOXD10
M05114_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_1 		0.766 0.702
HOXD10
M05115_2.00 		Homo sapiens
GTCGTAAAHN
NDTTTACGAC		 SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_2 		0.766 0.702
HOXD10
M05118_2.00 		Homo sapiens
VGTCGTAAAAH
DTTTTACGACB		 SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_1 		0.766 0.702
HOXD10
M05119_2.00 		Homo sapiens
DGYAATAAAAH
DTTTTATTRCH		 SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_2 		0.766 0.702
Hoxa10
M00382_2.00 		Mus musculus
NHWAYNNNN
NNNNRTWDN		 PBM
Berger et al.(2008)
Hoxa10_2318 		0.764 0.702
HOXA10
M05394_2.00 		Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY		 SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_1 		0.764 0.702
HOXA10
M05395_2.00 		Homo sapiens
NTTTTATKRCY
RGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_2 		0.764 0.702
HOXA10
M05398_2.00 		Homo sapiens
NRTCRTWAANN
NNTTWAYGAYN		 SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_1 		0.764 0.702
HOXA10
M05399_2.00 		Homo sapiens
NNTTWATKRCN
NGYMATWAANN		 SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_2 		0.764 0.702
Hoxa10
M09170_2.00 		Mus musculus
DCATAAAYYRBH
DVYRRTTTATGH		 Misc
Kulakovskiy et al.(2013)
HXA10_MOUSE.H11MO.0.C 		0.764 0.702
Hoxa10
M10763_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA10_Q5 		0.764 0.702
HOXA10
M05396_2.00 		Homo sapiens
NGTCGTAAAWN
NWTTTACGACN		 SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_1 		0.764 0.702
HOXA10
M05397_2.00 		Homo sapiens
NTTTTATKRCB
VGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_2 		0.764 0.702
HOXA10
M05400_2.00 		Homo sapiens
NRTCGTWAANN
NNTTWACGAYN		 SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_1 		0.764 0.702
HOXA10
M05401_2.00 		Homo sapiens
NNTTWATKRYN
NRYMATWAANN		 SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_2 		0.764 0.702
Hoxa9
M00475_2.00 		Mus musculus
NNDDBNNN
NNNVHHNN		 PBM
Berger et al.(2008)
Hoxa9_2622 		0.750 0.667
HOXA9
M03085_2.00 		Homo sapiens
NNDTTWAYGAYN
NRTCRTWAAHNN		 SELEX
Jolma et al.(2013)
HOXA10_1 		0.750 0.667
HOXA9
M03086_2.00 		Homo sapiens
NDTTWATKRYN
NRYMATWAAHN		 SELEX
Jolma et al.(2013)
HOXA10_2 		0.750 0.667
Hoxd9
M03282_2.00 		Mus musculus
TTTWATKKB
VMMATWAAA		 SELEX
Jolma et al.(2013)
Hoxd9_1 		0.750 0.667
Hoxd9
M03283_2.00 		Mus musculus
DWTTWATKRY
RYMATWAAWH		 SELEX
Jolma et al.(2013)
Hoxd9_2 		0.750 0.667
Hoxd9
M03284_2.00 		Mus musculus
DTTWAYGRB
VYCRTWAAH		 SELEX
Jolma et al.(2013)
Hoxd9_3 		0.750 0.667
HOXA9
M04932_2.00 		Homo sapiens
NNDWWABKRC
GYMVTWWHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_1 		0.750 0.667
HOXA9
M04933_2.00 		Homo sapiens
NNDTWAYGRB
VYCRTWAHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_2 		0.750 0.667
HOXC9
M05331_2.00 		Homo sapiens
GTCGTAAAAN
NTTTTACGAC		 SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_1 		0.750 0.667
HOXC9
M05332_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_2 		0.750 0.667
HOXD9
M05104_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_1 		0.750 0.667
HOXD9
M05105_2.00 		Homo sapiens
RTCRTAAAWN
NWTTTAYGAY		 SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_2 		0.750 0.667
HOXD9
M05108_2.00 		Homo sapiens
RTCGTAAAWN
NWTTTACGAY		 SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_1 		0.750 0.667
HOXD9
M05109_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_2 		0.750 0.667
Hoxa9
M08138_2.00 		Mus musculus
TGATTKATKRB
VYMATMAATCA		 ChIP-seq
Mathelier et al.(2014)
MA0594.1 		0.750 0.667
HOXA9
M09130_2.00 		Homo sapiens
DCATAAAYYRBH
DVYRRTTTATGH		 Misc
Kulakovskiy et al.(2013)
HXA10_HUMAN.H11MO.0.C 		0.750 0.667
HOXA9
M09131_2.00 		Homo sapiens
HHATAAATCAH
DTGATTTATDD		 Misc
Kulakovskiy et al.(2013)
HXA9_HUMAN.H11MO.0.B 		0.750 0.667
HOXC9
M09161_2.00 		Homo sapiens
HTTWATKGCH
DGCMATWAAD		 Misc
Kulakovskiy et al.(2013)
HXC9_HUMAN.H11MO.0.C 		0.750 0.667
Hoxa9
M09203_2.00 		Mus musculus
HHATAAATCAH
DTGATTTATDD		 Misc
Kulakovskiy et al.(2013)
HXA9_MOUSE.H11MO.0.B 		0.750 0.667
Hoxa9
M09575_2.00 		Mus musculus
WGATTKATDRBY
RVYHATMAATCW		 Misc
Heinz et al.(2010)
HSC-Hoxa9_GSE33509 		0.750 0.667
HOXA9
M10642_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA10_Q6 		0.750 0.667
HOXA9
M10643_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA9_04 		0.750 0.667
HOXA9
M10644_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA9_Q5_01 		0.750 0.667
HOXA9
M10645_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA9_Q5 		0.750 0.667
HOXD9
M10686_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD9_Q2 		0.750 0.667
HOXA9
M04934_2.00 		Homo sapiens
NNDTWAYKRC
GYMRTWAHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_1 		0.750 0.667
HOXA9
M04935_2.00 		Homo sapiens
NNDTWACGAY
RTCGTWAHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_2 		0.750 0.667
HOXC9
M05333_2.00 		Homo sapiens
RTCGTAAAHN
NDTTTACGAY		 SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_1 		0.750 0.667
HOXC9
M05334_2.00 		Homo sapiens
NTTTWATKRC
GYMATWAAAN		 SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_2 		0.750 0.667
HOXD9
M05106_2.00 		Homo sapiens
NNTTWATKRC
GYMATWAANN		 SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_1 		0.750 0.667
HOXD9
M05107_2.00 		Homo sapiens
RTCGTAAANN
NNTTTACGAY		 SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_2 		0.750 0.667
HOXD9
M05110_2.00 		Homo sapiens
RTCGTAAANN
NNTTTACGAY		 SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_1 		0.750 0.667
HOXD9
M05111_2.00 		Homo sapiens
NDTTWATKRC
GYMATWAAHN		 SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_2 		0.750 0.667
Hoxb9
M00410_2.00 		Mus musculus
NTTWAYDDNN
NNHHRTWAAN		 PBM
Berger et al.(2008)
Hoxb9_3413 		0.750 0.649
HOXB9
M05289_2.00 		Homo sapiens
RTCRTAAAWN
NWTTTAYGAY		 SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_1 		0.750 0.649
HOXB9
M05290_2.00 		Homo sapiens
NTTTWATKRC
GYMATWAAAN		 SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_2 		0.750 0.649
HOXB9
M05291_2.00 		Homo sapiens
GTCGTAAAHB
VDTTTACGAC		 SELEX
Yin et al.(2017)
HOXB9_eDBD_Methyl-HT-SELEX 		0.750 0.649
Hoxc9
M00470_2.00 		Mus musculus
NGTAATWAAN
NTTWATTACN		 PBM
Berger et al.(2008)
Hoxc9_2367 		0.742 0.649
Hoxc9
M08137_2.00 		Mus musculus
NWGATTTATDGSH
DSCHATAAATCWN		 ChIP-seq
Mathelier et al.(2014)
MA0485.1 		0.742 0.649
Hoxc9
M09574_2.00 		Mus musculus
TGATTTATDGCH
DGCHATAAATCA		 Misc
Heinz et al.(2010)
Ainv15-Hoxc9_GSE21812 		0.742 0.649
Hoxd12_CONSTRUCT
M00538_2.00 		PBM CONSTRUCTS
NWTWAYNDBN
NVHNRTWAWN		 PBM
Berger et al.(2008)
Hoxd12_3481 		0.651 0.667
HOXD12
M03206_2.00 		Homo sapiens
SYAATAAAA
TTTTATTRS		 SELEX
Jolma et al.(2013)
HOXD12_1 		0.651 0.667
HOXD12
M03207_2.00 		Homo sapiens
RVTCGTAAAAH
DTTTTACGABY		 SELEX
Jolma et al.(2013)
HOXD12_2 		0.651 0.667
HOXD12
M03208_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Jolma et al.(2013)
HOXD12_3 		0.651 0.667
HOXD12
M03209_2.00 		Homo sapiens
DTTWATYRC
GYRATWAAH		 SELEX
Jolma et al.(2013)
HOXD12_4 		0.651 0.667
HOXD12
M05279_2.00 		Homo sapiens
NKTWACGAYN
NRTCGTWAMN		 SELEX
Yin et al.(2017)
HOXD12_eDBD_HT-SELEX 		0.651 0.667
HOXD12
M05280_2.00 		Homo sapiens
NRTCGTAAAH
DTTTACGAYN		 SELEX
Yin et al.(2017)
HOXD12_eDBD_Methyl-HT-SELEX 		0.651 0.667
Abd-B
M00554_2.00 		Drosophila melanogaster
NWTWAYDDNN
NNHHRTWAWN		 PBM
Busser et al.(2012a)
Abd-B 		0.624 0.719
Abd-B
M03772_2.00 		Drosophila melanogaster
DRTCRTAAAWH
DWTTTAYGAYH		 SELEX
Nitta et al.(2015)
Abd-B_1 		0.624 0.719
Abd-B
M03773_2.00 		Drosophila melanogaster
DTTTTATKRCY
RGYMATAAAAH		 SELEX
Nitta et al.(2015)
Abd-B_2 		0.624 0.719
Abd-B
M03774_2.00 		Drosophila melanogaster
NKCARYAACGACYW
WRGTCGTTRYTGMN		 SELEX
Nitta et al.(2015)
Abd-B_3 		0.624 0.719
Abd-B
M03775_2.00 		Drosophila melanogaster
DTTTWATGKSTTTY
RAAASMCATWAAAH		 SELEX
Nitta et al.(2015)
Abd-B_4 		0.624 0.719
Abd-B
M06476_2.00 		Drosophila melanogaster
TTTATKR
YMATAAA		 B1H
Mathelier et al.(2014)
MA0165.1 		0.624 0.719
Abd-B
M06211_2.00 		Drosophila melanogaster
YCATAAAA
TTTTATGR		 B1H
Zhu et al.(2011)
Abd-B_FlyReg_FBgn0000015 		0.624 0.719
Abd-B
M09672_2.00 		Drosophila melanogaster
YMATAAAAHH
DDTTTTATKR		 Misc
Kulakovskiy et al.(2009)
Abd-B 		0.624 0.719
Abd-B
M10779_2.00 		Drosophila melanogaster
VSNTTDATKRCNNN
NNNGYMATHAANSB		 Transfac
Matys et al.(2006)
I$ABDB_01 		0.624 0.719
Abd-B
M10780_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$ABDB_Q6 		0.624 0.719
HXD12_HETFR
M02196_2.00 		Heterodontus francisci
TTWATKRC
GYMATWAA		 PBM
Weirauch et al.(2014)
pTH6533 		0.618 0.649
Hoxc12
M00508_2.00 		Mus musculus
NDTWAYNDBN
NVHNRTWAHN		 PBM
Berger et al.(2008)
Hoxc12_3480 		0.606 0.632
HOXC12
M03135_2.00 		Homo sapiens
TTTTATTRY
RYAATAAAA		 SELEX
Jolma et al.(2013)
HOXC12_1 		0.606 0.632
HOXC12
M03136_2.00 		Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY		 SELEX
Jolma et al.(2013)
HOXC12_2 		0.606 0.632
HOXC12
M05083_2.00 		Homo sapiens
NGYAATAAAAN
NTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1 		0.606 0.632
HOXC12
M05084_2.00 		Homo sapiens
VRTCGTAAAHN
NDTTTACGAYB		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2 		0.606 0.632
HOXC12
M05085_2.00 		Homo sapiens
NGYAATAAAAH
DTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1 		0.606 0.632
HOXC12
M05086_2.00 		Homo sapiens
NRTCGTAAAHH
DDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2 		0.606 0.632
CBG23031
M01245_2.00 		Caenorhabditis briggsae
NTTWATKRNN
NNYMATWAAN		 PBM
Lambert et al.(2019)
pTH11458 		0.599 0.544
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000446680 Homeodomain 233 289

Links

Other Homeodomain family TFs
Other Homo sapiens TFs

901 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
FOXN3 Homo sapiens ENSG00000053254 D 0.000
FOXN2 Homo sapiens ENSG00000170802 D 0.000
CHES-1-like Drosophila melanogaster FBgn0029504 D 0.000
NEMVEDRAFT_v1g67209 Nematostella vectensis NEMVEDRAFT_v1g67209 D 0.000
CpipJ_CPIJ002020 Culex pipiens CpipJ_CPIJ002020 I 0.000
AAEL008832 Aedes aegypti AAEL008832 I 0.000
ACYPI005943 Acyrthosiphon pisum ACYPI005943 I 0.000
ADAC006994 Anopheles darlingi ADAC006994 I 0.000
AGAP013178 Anopheles gambiae AGAP013178 I 0.000
CapteG102038 Capitella teleta CapteG102038 I 0.000
CGI_10011126 Crassostrea gigas CGI_10011126 I 0.000
CPIJ002020 Culex quinquefasciatus CPIJ002020 I 0.000
FOXN3 Anolis carolinensis ENSACAG00000012791 I 0.000
FOXN2 Anolis carolinensis ENSACAG00000014236 I 0.000
ENSAMEG00000001627 Ailuropoda melanoleuca ENSAMEG00000001627 I 0.000
ENSAMEG00000006413 Ailuropoda melanoleuca ENSAMEG00000006413 I 0.000
ENSAMXG00000001149 Astyanax mexicanus ENSAMXG00000001149 I 0.000
ENSAMXG00000008216 Astyanax mexicanus ENSAMXG00000008216 I 0.000
ENSAMXG00000009484 Astyanax mexicanus ENSAMXG00000009484 I 0.000
ENSAMXG00000018596 Astyanax mexicanus ENSAMXG00000018596 I 0.000
ENSAPLG00000009060 Anas platyrhynchos ENSAPLG00000009060 I 0.000
ENSAPLG00000016372 Anas platyrhynchos ENSAPLG00000016372 I 0.000
FOXN2 Bos taurus ENSBTAG00000015151 I 0.000
ENSBTAG00000046684 Bos taurus ENSBTAG00000046684 I 0.000
FOXN3 Canis familiaris ENSCAFG00000011068 I 0.000
FOXN2 Canis familiaris ENSCAFG00000029603 I 0.000
FOXN2 Callithrix jacchus ENSCJAG00000010894 I 0.000
FOXN3 Callithrix jacchus ENSCJAG00000017620 I 0.000
FOXN3 Cavia porcellus ENSCPOG00000004079 I 0.000
ENSCPOG00000026162 Cavia porcellus ENSCPOG00000026162 I 0.000
ENSCSAG00000013601 Chlorocebus sabaeus ENSCSAG00000013601 I 0.000
foxn3 Danio rerio ENSDARG00000012833 I 0.000
ches1 Danio rerio ENSDARG00000043553 I 0.000
foxn2b Danio rerio ENSDARG00000045105 I 0.000
CABZ01056727.1 Danio rerio ENSDARG00000055574 I 0.000
si:ch211-145o7.3 Danio rerio ENSDARG00000061548 I 0.000
FOXN3 Dasypus novemcinctus ENSDNOG00000003188 I 0.000
FOXN2 Dasypus novemcinctus ENSDNOG00000035609 I 0.000
Foxn2 Dipodomys ordii ENSDORG00000007020 I 0.000
ENSDORG00000007387 Dipodomys ordii ENSDORG00000007387 I 0.000
FOXN2 Equus caballus ENSECAG00000008390 I 0.000
FOXN3 Equus caballus ENSECAG00000026917 I 0.000
ENSEEUG00000008958 Erinaceus europaeus ENSEEUG00000008958 I 0.000
FOXN2 Erinaceus europaeus ENSEEUG00000015228 I 0.000
FOXN2 Echinops telfairi ENSETEG00000007413 I 0.000
ENSFALG00000011112 Ficedula albicollis ENSFALG00000011112 I 0.000
ENSFALG00000012332 Ficedula albicollis ENSFALG00000012332 I 0.000
FOXN3 Felis catus ENSFCAG00000012929 I 0.000
FOXN2 Felis catus ENSFCAG00000022828 I 0.000
foxn2b Gasterosteus aculeatus ENSGACG00000005486 I 0.000
FOXN3 Gallus gallus ENSGALG00000010665 I 0.000
FOXN2 Gorilla gorilla ENSGGOG00000008171 I 0.000
FOXN3 Gorilla gorilla ENSGGOG00000023852 I 0.000
ENSGMOG00000003346 Gadus morhua ENSGMOG00000003346 I 0.000
ENSGMOG00000016028 Gadus morhua ENSGMOG00000016028 I 0.000
ENSGMOG00000018188 Gadus morhua ENSGMOG00000018188 I 0.000
ENSLACG00000006234 Latimeria chalumnae ENSLACG00000006234 I 0.000
ENSLACG00000013808 Latimeria chalumnae ENSLACG00000013808 I 0.000
ENSLACG00000015298 Latimeria chalumnae ENSLACG00000015298 I 0.000
FOXN2 Loxodonta africana ENSLAFG00000012466 I 0.000
FOXN3 Loxodonta africana ENSLAFG00000016005 I 0.000
ENSLOCG00000000880 Lepisosteus oculatus ENSLOCG00000000880 I 0.000
ENSLOCG00000008977 Lepisosteus oculatus ENSLOCG00000008977 I 0.000
ENSLOCG00000016292 Lepisosteus oculatus ENSLOCG00000016292 I 0.000
ENSMEUG00000000214 Macropus eugenii ENSMEUG00000000214 I 0.000
FOXN2 Meleagris gallopavo ENSMGAG00000005062 I 0.000
FOXN3 Meleagris gallopavo ENSMGAG00000013026 I 0.000
FOXN3 Myotis lucifugus ENSMLUG00000008780 I 0.000
FOXN2 Myotis lucifugus ENSMLUG00000017567 I 0.000
FOXN3 Macaca mulatta ENSMMUG00000019898 I 0.000
FOXN2 Macaca mulatta ENSMMUG00000020677 I 0.000
FOXN2 Monodelphis domestica ENSMODG00000001169 I 0.000
FOXN3 Monodelphis domestica ENSMODG00000003001 I 0.000
ENSMPUG00000008174 Mustela putorius furo ENSMPUG00000008174 I 0.000
ENSMPUG00000010993 Mustela putorius furo ENSMPUG00000010993 I 0.000
Foxn3 Mus musculus ENSMUSG00000033713 I 0.000
Foxn2 Mus musculus ENSMUSG00000034998 I 0.000
ENSNLEG00000008649 Nomascus leucogenys ENSNLEG00000008649 I 0.000
ENSNLEG00000016989 Nomascus leucogenys ENSNLEG00000016989 I 0.000
ENSOARG00000004763 Ovis aries ENSOARG00000004763 I 0.000
FOXN3 Oryctolagus cuniculus ENSOCUG00000004392 I 0.000
FOXN2 Oryctolagus cuniculus ENSOCUG00000009784 I 0.000
FOXN3 Otolemur garnettii ENSOGAG00000001733 I 0.000
FOXN2 Otolemur garnettii ENSOGAG00000011745 I 0.000
ENSONIG00000001158 Oreochromis niloticus ENSONIG00000001158 I 0.000
ENSONIG00000009856 Oreochromis niloticus ENSONIG00000009856 I 0.000
FOXN3 Ochotona princeps ENSOPRG00000002931 I 0.000
ENSORLG00000002068 Oryzias latipes ENSORLG00000002068 I 0.000
ches1 Oryzias latipes ENSORLG00000010729 I 0.000
foxn2b Oryzias latipes ENSORLG00000011005 I 0.000
ENSPANG00000013263 Papio anubis ENSPANG00000013263 I 0.000
ENSPANG00000016397 Papio anubis ENSPANG00000016397 I 0.000
FOXN2 Procavia capensis ENSPCAG00000005254 I 0.000
FOXN3 Procavia capensis ENSPCAG00000013761 I 0.000
ENSPFOG00000001305 Poecilia formosa ENSPFOG00000001305 I 0.000
ENSPFOG00000015286 Poecilia formosa ENSPFOG00000015286 I 0.000
ENSPFOG00000021830 Poecilia formosa ENSPFOG00000021830 I 0.000
ENSPPYG00000012423 Pongo abelii ENSPPYG00000012423 I 0.000
ENSPSIG00000013517 Pelodiscus sinensis ENSPSIG00000013517 I 0.000
FOXN3 Pan troglodytes ENSPTRG00000006614 I 0.000
FOXN2 Pan troglodytes ENSPTRG00000011908 I 0.000
Foxn3 Rattus norvegicus ENSRNOG00000004709 I 0.000
Foxn2 Rattus norvegicus ENSRNOG00000040110 I 0.000
FOXN2 Sorex araneus ENSSARG00000003696 I 0.000
ENSSHAG00000001461 Sarcophilus harrisii ENSSHAG00000001461 I 0.000
ENSSHAG00000010850 Sarcophilus harrisii ENSSHAG00000010850 I 0.000
FOXN3 Sus scrofa ENSSSCG00000002429 I 0.000
FOXN2 Sus scrofa ENSSSCG00000029593 I 0.000
ENSSTOG00000000862 Ictidomys tridecemlineatus ENSSTOG00000000862 I 0.000
ENSSTOG00000014643 Ictidomys tridecemlineatus ENSSTOG00000014643 I 0.000
FOXN3 Tupaia belangeri ENSTBEG00000003603 I 0.000
ENSTGUG00000012441 Taeniopygia guttata ENSTGUG00000012441 I 0.000
ENSTNIG00000002057 Tetraodon nigroviridis ENSTNIG00000002057 I 0.000
foxn2b Tetraodon nigroviridis ENSTNIG00000016601 I 0.000
ches1 Takifugu rubripes ENSTRUG00000003497 I 0.000
ENSTRUG00000012249 Takifugu rubripes ENSTRUG00000012249 I 0.000
foxn2b Takifugu rubripes ENSTRUG00000013724 I 0.000
ENSTSYG00000014704 Tarsius syrichta ENSTSYG00000014704 I 0.000
FOXN3 Tursiops truncatus ENSTTRG00000000817 I 0.000
FOXN2 Vicugna pacos ENSVPAG00000009218 I 0.000
ENSXMAG00000001667 Xiphophorus maculatus ENSXMAG00000001667 I 0.000
ENSXMAG00000013148 Xiphophorus maculatus ENSXMAG00000013148 I 0.000
GF21122 Drosophila ananassae FBgn0098127 I 0.000
GG17614 Drosophila erecta FBgn0109837 I 0.000
GH12836 Drosophila grimshawi FBgn0120315 I 0.000
GI14920 Drosophila mojavensis FBgn0137671 I 0.000
GL14605 Drosophila persimilis FBgn0152210 I 0.000
GM17463 Drosophila sechellia FBgn0172373 I 0.000
GJ18953 Drosophila virilis FBgn0206099 I 0.000
GK19775 Drosophila willistoni FBgn0221773 I 0.000
GE17515 Drosophila yakuba FBgn0234975 I 0.000
GA27773 Drosophila pseudoobscura FBgn0249137 I 0.000
GB45298 Apis mellifera GB45298 I 0.000
HMEL010214 Heliconius melpomene HMEL010214 I 0.000
KGM_12006 Danaus plexippus KGM_12006 I 0.000
L798_02484 Zootermopsis nevadensis L798_02484 I 0.000
LotgiG138633 Lottia gigantea LotgiG138633 I 0.000
ML077613a Mnemiopsis leidyi ML077613a I 0.000
NV15444 Nasonia vitripennis NV15444 I 0.000
SINV12530 Solenopsis invicta SINV12530 I 0.000
TC030764 Tribolium castaneum TC030764 I 0.000
tetur19g01540 Tetranychus urticae tetur19g01540 I 0.000
YQE_02614 Dendroctonus ponderosae YQE_02614 I 0.000
YQE_02630 Dendroctonus ponderosae YQE_02630 I 0.000
YQE_03399 Dendroctonus ponderosae YQE_03399 I 0.000
Cflo_06973--XP_625198.2_APIME Camponotus floridanus Cflo_06973--XP_625198.2_APIME I 0.000
Cmyd_10013867 Chelonia mydas Cmyd_10013867 I 0.000
ENSP00000261302 Macaca fascicularis ENSP00000261302 I 0.000
ENSP00000343633 Macaca fascicularis ENSP00000343633 I 0.000
ENSP00000394031-D1 Bos grunniens ENSP00000394031-D1 I 0.000
Hsal_12079--XP_625198.2_APIME Harpegnathos saltator Hsal_12079--XP_625198.2_APIME I 0.000
Myotis_brandtii_FOXN2_10033482 Myotis brandtii Myotis_brandtii_FOXN2_10033482 I 0.000
Ogr01321 Ophisaurus gracilis Ogr01321 I 0.000
Ogr07715 Ophisaurus gracilis Ogr07715 I 0.000
Pvit_15105 Pogona vitticeps Pvit_15105 I 0.000
gw.10.104.1 Branchiostoma floridae gw.10.104.1 I 0.000
gw.384.13.1 Branchiostoma floridae gw.384.13.1 I 0.000
Sakowv30028653m.g Saccoglossus kowalevskii Sakowv30028653m.g I 0.000
LCUP017282 Lucilia cuprina LCUP017282 I 0.000
foxn3 Xenopus tropicalis XB-GENE-483117 I 0.000
foxn3.L Xenopus laevis XB-GENE-6448222 I 0.000
foxn3.S Xenopus laevis XB-GENE-864945 I 0.000
foxn2 Xenopus tropicalis XB-GENE-952918 I 0.000
foxn2.S Xenopus laevis XB-GENE-952923 I 0.000
AALB008878 Anopheles albimanus AALB008878 I 0.000
AARA006907 Anopheles arabiensis AARA006907 I 0.000
AATE000717 Anopheles atroparvus AATE000717 I 0.000
ACUA012004 Anopheles culicifacies ACUA012004 I 0.000
ADIR002427 Anopheles dirus ADIR002427 I 0.000
AFAF006655 Anopheles farauti AFAF006655 I 0.000
AFUN001697 Anopheles funestus AFUN001697 I 0.000
AMAM012648 Anopheles maculatus AMAM012648 I 0.000
AMEC021917 Anopheles melas AMEC021917 I 0.000
AMEM007698 Anopheles merus AMEM007698 I 0.000
AMIN003345 Anopheles minimus AMIN003345 I 0.000
AQUA002332 Anopheles quadriannulatus AQUA002332 I 0.000
ASIS003979 Anopheles sinensis ASIS003979 I 0.000
ASTEI05563 Anopheles stephensi ASTEI05563 I 0.000
BGLB008394 Biomphalaria glabrata BGLB008394 I 0.000
LLOJ006903 Lutzomyia longipalpis LLOJ006903 I 0.000
MDOA011809 Musca domestica MDOA011809 I 0.000