OBART10G13430 (Oryza barthii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 OBART10G13430 T221371_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.837 0.911
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.837 0.911
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.837 0.911
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.832 0.875
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.832 0.875
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART10G13430.1 Homeodomain 28 87
OBART10G13430.2 Homeodomain 41 100

Links

Other Homeodomain family TFs
Other Oryza barthii TFs

333 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC029 Arabidopsis thaliana AT1G69490 D 0.000
Traes_5BL_CC18CAD72 Triticum aestivum Traes_5BL_CC18CAD72 D 0.000
mgf022118m Mimulus guttatus mgf022118m I 0.000
evm.TU.supercontig_1.48 Carica papaya evm.TU.supercontig_1.48 I 0.000
Eucgr.G02486 Eucalyptus grandis Eucgr.G02486 I 0.000
Eucgr.B03208 Eucalyptus grandis Eucgr.B03208 I 0.000
Ciclev10032304m.g Citrus clementina Ciclev10032304m.g I 0.000
Carubv10020776m.g Capsella rubella Carubv10020776m.g I 0.000
Cagra.0887s0008 Capsella grandiflora Cagra.0887s0008 I 0.000
Bostr.10273s0418 Boechera stricta Bostr.10273s0418 I 0.000
Aquca_002_00663 Aquilegia coerulea Aquca_002_00663 I 0.000
Gorai.005G142300 Gossypium raimondii Gorai.005G142300 I 0.000
mgf016848m Mimulus guttatus mgf016848m I 0.000
Cucsa.284890 Cucumis sativus Cucsa.284890 I 0.000
cassava1317.valid.m1 Manihot esculenta cassava1317.valid.m1 I 0.000
Pm006470 Prunus mume Pm006470 I 0.000
Cla010367 Citrullus lanatus Cla010367 I 0.000
Ca_18090 Cicer arietinum Ca_18090 I 0.000
Ca_16379 Cicer arietinum Ca_16379 I 0.000
NAP Vitis vinifera VIT_01s0026g02710 I 0.000
Gorai.008G179900 Gossypium raimondii Gorai.008G179900 I 0.000
Lus10026617.g Linum usitatissimum Lus10026617.g I 0.000
Lus10030446.g Linum usitatissimum Lus10030446.g I 0.000
Lus10036773.g Linum usitatissimum Lus10036773.g I 0.000
Lus10037156.g Linum usitatissimum Lus10037156.g I 0.000
MDP0000262990 Malus domestica MDP0000262990 I 0.000
MDP0000481448 Malus domestica MDP0000481448 I 0.000
orange1.1g023197m.g Citrus sinensis orange1.1g023197m.g I 0.000
Pavir.J23516 Panicum virgatum Pavir.J23516 I 0.000
SapurV1A.0063s0610 Salix purpurea SapurV1A.0063s0610 I 0.000
SapurV1A.0063s0620 Salix purpurea SapurV1A.0063s0620 I 0.000
SapurV1A.0801s0090 Salix purpurea SapurV1A.0801s0090 I 0.000
Thhalv10018997m.g Eutrema salsugineum Thhalv10018997m.g I 0.000
PK25119.1 Cannabis sativa PK25119.1 I 0.000
chr2.CM0641.320.nc Lotus japonicus chr2.CM0641.320.nc I 0.000
OMERI12G00480 Oryza meridionalis OMERI12G00480 I 0.000
Bo6g108930 Brassica oleracea Bo6g108930 I 0.000
Bra004385 Brassica rapa Bra004385 I 0.000
F775_26965 Aegilops tauschii F775_26965 I 0.000
NAP Arabidopsis lyrata fgenesh2_kg.2__1206__AT1G69490.1 I 0.000
GLYMA01G06150 Glycine max GLYMA01G06150 I 0.000
GLYMA02G12220 Glycine max GLYMA02G12220 I 0.000
GLYMA07G35630 Glycine max GLYMA07G35630 I 0.000
GLYMA20G04400 Glycine max GLYMA20G04400 I 0.000
GSMUA_Achr6G32320_001 Musa acuminata GSMUA_Achr6G32320_001 I 0.000
GSMUA_Achr7G21770_001 Musa acuminata GSMUA_Achr7G21770_001 I 0.000
MLOC_4747 Hordeum vulgare MLOC_4747 I 0.000
MTR_4g081870 Medicago truncatula MTR_4g081870 I 0.000
MTR_5g041940 Medicago truncatula MTR_5g041940 I 0.000
OB11G11210 Oryza brachyantha OB11G11210 I 0.000
OB12G11500 Oryza brachyantha OB12G11500 I 0.000
Bo6g095510 Brassica oleracea Bo6g095510 I 0.000
OPUNC11G01330 Oryza punctata OPUNC11G01330 I 0.000
OPUNC12G01370 Oryza punctata OPUNC12G01370 I 0.000
PGSC0003DMG400002824 Solanum tuberosum PGSC0003DMG400002824 I 0.000
PGSC0003DMG400018435 Solanum tuberosum PGSC0003DMG400018435 I 0.000
POPTR_0008s08850 Populus trichocarpa POPTR_0008s08850 I 0.000
POPTR_0010s17350 Populus trichocarpa POPTR_0010s17350 I 0.000
PRUPE_ppa009530mg Prunus persica PRUPE_ppa009530mg I 0.000
Sb05g001580 Sorghum bicolor Sb05g001580 I 0.000
Sb08g001940 Sorghum bicolor Sb08g001940 I 0.000
Si010410m.g Setaria italica Si010410m.g I 0.000
Si026530m.g Setaria italica Si026530m.g I 0.000
Solyc04g005610.2 Solanum lycopersicum Solyc04g005610.2 I 0.000
Solyc05g007770.2 Solanum lycopersicum Solyc05g007770.2 I 0.000
TCM_011671 Theobroma cacao TCM_011671 I 0.000
AMTR_s00119p00040230 Amborella trichopoda AMTR_s00119p00040230 I 0.000