Solyc01g109980.2 (Solanum lycopersicum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Solyc01g109980.2 T223542_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.840 0.792
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.583
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.438
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.438
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.438
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.438
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc01g109980.2.1 Homeodomain 401 451

Links

Other Homeodomain family TFs
Other Solanum lycopersicum TFs

1013 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PAX6 Homo sapiens ENSG00000007372 D 0.000
PAX7 Homo sapiens ENSG00000009709 D 0.000
pax2b Danio rerio ENSDARG00000032578 D 0.000
pax9 Danio rerio ENSDARG00000053829 D 0.000
PAX9 Homo sapiens ENSG00000198807 D 0.000
Pax5 Mus musculus ENSMUSG00000014030 D 0.000
pax-2 Caenorhabditis elegans WBGene00003938 D 0.000
pax6b Danio rerio ENSDARG00000045936 I 0.000
pax6a Danio rerio ENSDARG00000103379 I 0.000
ENSLOCG00000012825 Lepisosteus oculatus ENSLOCG00000012825 I 0.000
pax2.L Xenopus laevis XB-GENE-486805 I 0.000
CpipJ_CPIJ009206 Culex pipiens CpipJ_CPIJ009206 I 0.000
ACEP12359 Atta cephalotes ACEP12359 I 0.000
ACEP20056 Atta cephalotes ACEP20056 I 0.000
ACYPI52155 Acyrthosiphon pisum ACYPI52155 I 0.000
AGAP000057 Anopheles gambiae AGAP000057 I 0.000
CGI_10012686 Crassostrea gigas CGI_10012686 I 0.000
CPIJ009206 Culex quinquefasciatus CPIJ009206 I 0.000
DAPPUDRAFT_307722 Daphnia pulex DAPPUDRAFT_307722 I 0.000
DAPPUDRAFT_311028 Daphnia pulex DAPPUDRAFT_311028 I 0.000
DAPPUDRAFT_38922 Daphnia pulex DAPPUDRAFT_38922 I 0.000
ENSACAG00000001481 Anolis carolinensis ENSACAG00000001481 I 0.000
ENSACAG00000011033 Anolis carolinensis ENSACAG00000011033 I 0.000
PAX5 Anolis carolinensis ENSACAG00000011646 I 0.000
ENSAMEG00000002906 Ailuropoda melanoleuca ENSAMEG00000002906 I 0.000
ENSAMXG00000002161 Astyanax mexicanus ENSAMXG00000002161 I 0.000
ENSAMXG00000018287 Astyanax mexicanus ENSAMXG00000018287 I 0.000
ENSAPLG00000012856 Anas platyrhynchos ENSAPLG00000012856 I 0.000
PAX9 Bos taurus ENSBTAG00000009186 I 0.000
PAX9 Canis familiaris ENSCAFG00000013690 I 0.000
PAX9 Callithrix jacchus ENSCJAG00000016460 I 0.000
PAX9 Cavia porcellus ENSCPOG00000010951 I 0.000
ENSCSAG00000015463 Chlorocebus sabaeus ENSCSAG00000015463 I 0.000
pax1a Danio rerio ENSDARG00000008203 I 0.000
pax8 Danio rerio ENSDARG00000015879 I 0.000
pax2a Danio rerio ENSDARG00000028148 I 0.000
PAX9 Dasypus novemcinctus ENSDNOG00000000352 I 0.000
Pax7 Dipodomys ordii ENSDORG00000011854 I 0.000
PAX9 Equus caballus ENSECAG00000023712 I 0.000
PAX9 Echinops telfairi ENSETEG00000002086 I 0.000
ENSFALG00000006155 Ficedula albicollis ENSFALG00000006155 I 0.000
PAX9 Felis catus ENSFCAG00000001024 I 0.000
pax1a Gasterosteus aculeatus ENSGACG00000006987 I 0.000
pax9 Gasterosteus aculeatus ENSGACG00000011298 I 0.000
PAX9 Gallus gallus ENSGALG00000010114 I 0.000
PAX9 Gorilla gorilla ENSGGOG00000001528 I 0.000
ENSGMOG00000000463 Gadus morhua ENSGMOG00000000463 I 0.000
ENSGMOG00000009128 Gadus morhua ENSGMOG00000009128 I 0.000
ENSLACG00000013159 Latimeria chalumnae ENSLACG00000013159 I 0.000
PAX9 Loxodonta africana ENSLAFG00000017541 I 0.000
ENSLOCG00000013992 Lepisosteus oculatus ENSLOCG00000013992 I 0.000
ENSLOCG00000015261 Lepisosteus oculatus ENSLOCG00000015261 I 0.000
ENSMEUG00000002095 Macropus eugenii ENSMEUG00000002095 I 0.000
PAX8 Microcebus murinus ENSMICG00000003265 I 0.000
PAX9 Microcebus murinus ENSMICG00000010808 I 0.000
PAX9 Myotis lucifugus ENSMLUG00000011407 I 0.000
PAX9 Macaca mulatta ENSMMUG00000009648 I 0.000
PAX9 Monodelphis domestica ENSMODG00000012681 I 0.000
ENSMODG00000025571 Monodelphis domestica ENSMODG00000025571 I 0.000
ENSMPUG00000016259 Mustela putorius furo ENSMPUG00000016259 I 0.000
Pax9 Mus musculus ENSMUSG00000001497 I 0.000
ENSNLEG00000003346 Nomascus leucogenys ENSNLEG00000003346 I 0.000
PAX1 Ornithorhynchus anatinus ENSOANG00000002008 I 0.000
PAX9 Ornithorhynchus anatinus ENSOANG00000014065 I 0.000
ENSOARG00000008050 Ovis aries ENSOARG00000008050 I 0.000
ENSOGAG00000013131 Otolemur garnettii ENSOGAG00000013131 I 0.000
ENSONIG00000000990 Oreochromis niloticus ENSONIG00000000990 I 0.000
ENSONIG00000008137 Oreochromis niloticus ENSONIG00000008137 I 0.000
ENSONIG00000016065 Oreochromis niloticus ENSONIG00000016065 I 0.000
PAX8 Ochotona princeps ENSOPRG00000012910 I 0.000
pax8 Oryzias latipes ENSORLG00000007225 I 0.000
pax1 Oryzias latipes ENSORLG00000017412 I 0.000
ENSORLG00000019389 Oryzias latipes ENSORLG00000019389 I 0.000
ENSPANG00000000932 Papio anubis ENSPANG00000000932 I 0.000
PAX7 Procavia capensis ENSPCAG00000005303 I 0.000
ENSPFOG00000003208 Poecilia formosa ENSPFOG00000003208 I 0.000
ENSPFOG00000003702 Poecilia formosa ENSPFOG00000003702 I 0.000
ENSPFOG00000017550 Poecilia formosa ENSPFOG00000017550 I 0.000
ENSPMAG00000010414 Petromyzon marinus ENSPMAG00000010414 I 0.000
ENSPPYG00000005755 Pongo abelii ENSPPYG00000005755 I 0.000
ENSPSIG00000010961 Pelodiscus sinensis ENSPSIG00000010961 I 0.000
PAX9 Pan troglodytes ENSPTRG00000006281 I 0.000
Pax9 Rattus norvegicus ENSRNOG00000008826 I 0.000
Pax5 Rattus norvegicus ENSRNOG00000024729 I 0.000
PAX9 Sorex araneus ENSSARG00000000337 I 0.000
ENSSHAG00000005531 Sarcophilus harrisii ENSSHAG00000005531 I 0.000
ENSSSCG00000001943 Sus scrofa ENSSSCG00000001943 I 0.000
ENSSTOG00000015730 Ictidomys tridecemlineatus ENSSTOG00000015730 I 0.000
PAX9 Tupaia belangeri ENSTBEG00000002460 I 0.000
PAX5 Tupaia belangeri ENSTBEG00000007983 I 0.000
PAX9 Taeniopygia guttata ENSTGUG00000012015 I 0.000
pax5 Tetraodon nigroviridis ENSTNIG00000005085 I 0.000
pax8 Tetraodon nigroviridis ENSTNIG00000009029 I 0.000
ENSTNIG00000013141 Tetraodon nigroviridis ENSTNIG00000013141 I 0.000
pax1a Tetraodon nigroviridis ENSTNIG00000016891 I 0.000
pax9 Tetraodon nigroviridis ENSTNIG00000019284 I 0.000
pax1a Takifugu rubripes ENSTRUG00000008079 I 0.000
pax9 Takifugu rubripes ENSTRUG00000011965 I 0.000
pax2b Takifugu rubripes ENSTRUG00000011987 I 0.000
ENSTRUG00000014051 Takifugu rubripes ENSTRUG00000014051 I 0.000
ENSTSYG00000008085 Tarsius syrichta ENSTSYG00000008085 I 0.000
PAX5 Tursiops truncatus ENSTTRG00000006049 I 0.000
PAX8 Vicugna pacos ENSVPAG00000003973 I 0.000
ENSXMAG00000015762 Xiphophorus maculatus ENSXMAG00000015762 I 0.000
ENSXMAG00000019114 Xiphophorus maculatus ENSXMAG00000019114 I 0.000
GH20564 Drosophila grimshawi FBgn0128027 I 0.000
GH23966 Drosophila grimshawi FBgn0131423 I 0.000
GI14046 Drosophila mojavensis FBgn0136800 I 0.000
GL18401 Drosophila persimilis FBgn0156002 I 0.000
GM13025 Drosophila sechellia FBgn0167956 I 0.000
GJ13730 Drosophila virilis FBgn0200951 I 0.000
GK13586 Drosophila willistoni FBgn0215594 I 0.000
spa-sv Drosophila pseudoobscura FBgn0249275 I 0.000
HelroG124549 Helobdella robusta HelroG124549 I 0.000
ISCW000175 Ixodes scapularis ISCW000175 I 0.000
L798_15745 Zootermopsis nevadensis L798_15745 I 0.000
LotgiG135549 Lottia gigantea LotgiG135549 I 0.000
LotgiG161614 Lottia gigantea LotgiG161614 I 0.000
MESCA003563 Megaselia scalaris MESCA003563 I 0.000
RPRC001910 Rhodnius prolixus RPRC001910 I 0.000
SMAR014608 Strigamia maritima SMAR014608 I 0.000
Aan_R005718 Calypte anna Aan_R005718 I 0.000
Afo_R004464 Aptenodytes forsteri Afo_R004464 I 0.000
Alligator_sinensis_CCG006492.1 Alligator sinensis Alligator_sinensis_CCG006492.1 I 0.000
Cflo_00736--XP_001122746.1_APIME Camponotus floridanus Cflo_00736--XP_001122746.1_APIME I 0.000
Cflo_05394--XP_001120031.1_APIME Camponotus floridanus Cflo_05394--XP_001120031.1_APIME I 0.000
ENSP00000355245 Macaca fascicularis ENSP00000355245 I 0.000
ENSP00000384817-D1 Bos grunniens ENSP00000384817-D1 I 0.000
Gfo_R012945 Geospiza fortis Gfo_R012945 I 0.000
Ogr19508 Ophisaurus gracilis Ogr19508 I 0.000
Pvit_17942 Pogona vitticeps Pvit_17942 I 0.000
estExt_fgenesh2_pg.C_420056 Branchiostoma floridae estExt_fgenesh2_pg.C_420056 I 0.000
Ocbimv22007901m.g Octopus bimaculoides Ocbimv22007901m.g I 0.000
Sakowv30023257m.g Saccoglossus kowalevskii Sakowv30023257m.g I 0.000
Sakowv30025789m.g Saccoglossus kowalevskii Sakowv30025789m.g I 0.000
CLEC012019 Cimex lectularius CLEC012019 I 0.000
LCUP005878 Lucilia cuprina LCUP005878 I 0.000
LCUP013028 Lucilia cuprina LCUP013028 I 0.000
LCUP015670 Lucilia cuprina LCUP015670 I 0.000
Sjc_0077510 Schistosoma japonicum Sjc_0077510 I 0.000
pax9 Xenopus tropicalis XB-GENE-482238 I 0.000
pax1 Xenopus tropicalis XB-GENE-487951 I 0.000
pax9.L Xenopus laevis XB-GENE-864845 I 0.000
AALB001179 Anopheles albimanus AALB001179 I 0.000
ACHR009211 Anopheles christyi ACHR009211 I 0.000
ACHR009800 Anopheles christyi ACHR009800 I 0.000
ACUA016445 Anopheles culicifacies ACUA016445 I 0.000
ACUA027429 Anopheles culicifacies ACUA027429 I 0.000
ADIR000964 Anopheles dirus ADIR000964 I 0.000
ADIR011362 Anopheles dirus ADIR011362 I 0.000
AEPI004837 Anopheles epiroticus AEPI004837 I 0.000
AFUN002668 Anopheles funestus AFUN002668 I 0.000
AFUN008226 Anopheles funestus AFUN008226 I 0.000
AFUN011579 Anopheles funestus AFUN011579 I 0.000
AMAM005900 Anopheles maculatus AMAM005900 I 0.000
AMAM010937 Anopheles maculatus AMAM010937 I 0.000
AMEC016969 Anopheles melas AMEC016969 I 0.000
AMEM003247 Anopheles merus AMEM003247 I 0.000
AMIN002123 Anopheles minimus AMIN002123 I 0.000
AMIN007194 Anopheles minimus AMIN007194 I 0.000
AQUA004184 Anopheles quadriannulatus AQUA004184 I 0.000
BGLB002028 Biomphalaria glabrata BGLB002028 I 0.000
BGLB007764 Biomphalaria glabrata BGLB007764 I 0.000
LLOJ002076 Lutzomyia longipalpis LLOJ002076 I 0.000
MDOA001030 Musca domestica MDOA001030 I 0.000
MDOA010966 Musca domestica MDOA010966 I 0.000
ANCCAN_01421 Ancylostoma caninum ANCCAN_01421 I 0.000
augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0 I 0.000
DICVIV_04707 Dictyocaulus viviparus DICVIV_04707 I 0.000
ECANG7_07793 Echinococcus canadensis ECANG7_07793 I 0.000
GPUH_0000812501 Gongylonema pulchrum GPUH_0000812501 I 0.000
HCOI01205400 Haemonchus contortus HCOI01205400 I 0.000
HPBE_0000479901 Heligmosomoides bakeri HPBE_0000479901 I 0.000
HPLM_0000491501 Haemonchus placei HPLM_0000491501 I 0.000
L596_g7168 Steinernema carpocapsae L596_g7168 I 0.000
L889_g28670 Steinernema feltiae L889_g28670 I 0.000
L898_g18055 Steinernema monticolum L898_g18055 I 0.000
OESDEN_18680 Oesophagostomum dentatum OESDEN_18680 I 0.000
PEQ_0001166701 Parascaris equorum PEQ_0001166701 I 0.000
PTRK_0001603600 Parastrongyloides trichosuri PTRK_0001603600 I 0.000
SBAD_0001213701 Soboliphyme baturini SBAD_0001213701 I 0.000
SCUD_0000535601 Schistosoma curassoni SCUD_0000535601 I 0.000
SPAL_0000372000 Strongyloides papillosus SPAL_0000372000 I 0.000
SROB_0000822501 Schistosoma rodhaini SROB_0000822501 I 0.000
SSLN_0001115101 Schistocephalus solidus SSLN_0001115101 I 0.000
SSTP_0000522800 Strongyloides stercoralis SSTP_0000522800 I 0.000
SVE_0227200 Strongyloides venezuelensis SVE_0227200 I 0.000
TELCIR_10899 Teladorsagia circumcincta TELCIR_10899 I 0.000
RPRC011448 Rhodnius prolixus RPRC011448 N 0.000
YQE_05418 Dendroctonus ponderosae YQE_05418 N 0.000
YQE_12759 Dendroctonus ponderosae YQE_12759 N 0.000
SMTD_0001015101 Schistosoma mattheei SMTD_0001015101 N 0.000