CUP9 (Saccharomyces cerevisiae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 YPL177C T224763_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CUP9
M00059_2.00		 Saccharomyces cerevisiae
TGACABHW
WDVTGTCA		 PBM
Badis et al.(2008)
CUP9_4508		 (Direct) (Direct)
CUP9
M01553_2.00		 Saccharomyces cerevisiae
NWGACAYWWH
DWWRTGTCWN		 PBM
Zhu et al.(2009)
Cup9		 (Direct) (Direct)
CUP9
M07488_2.00		 Saccharomyces cerevisiae
TGACAYAWW
WWTRTGTCA		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0288.1		 (Direct) (Direct)
CUP9
M08576_2.00		 Saccharomyces cerevisiae
TGACAYAWW
WWTRTGTCA		 Misc
DeBoer et al.(2011)
YPL177C_480		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TOS8
M02192_2.00 		Saccharomyces cerevisiae
NNNTKACGTMW
WKACGTMANNN		 PBM
Weirauch et al.(2014)
pTH5696 		0.804 0.800
TOS8
M00057_2.00 		Saccharomyces cerevisiae
NNNCRYGNNN
NNNCRYGNNN		 PBM
Badis et al.(2008)
TOS8_2100 		0.804 0.800
TOS8
M07486_2.00 		Saccharomyces cerevisiae
NWTGACAB
VTGTCAWN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0408.1 		0.804 0.800
TOS8
M08574_2.00 		Saccharomyces cerevisiae
NWTGACAB
VTGTCAWN		 Misc
DeBoer et al.(2011)
YGL096W_494 		0.804 0.800
CAGL0H02959g
M02060_2.00 		Candida glabrata
NDTDACRBNN
NNVYGTHAHN		 PBM
Weirauch et al.(2014)
pTH6455 		0.642 0.800
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00059_2.00 Homeodomain 163 220
M01553_2.00 Homeodomain 163 220

DNA Binding Domains

Protein ID Domain From To Sequence
YPL177C Homeodomain 163 220

Links

Other Homeodomain family TFs
Other Saccharomyces cerevisiae TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CAGL0H02959g Candida glabrata CAGL0H02959g D 0.642
TOS8 Saccharomyces cerevisiae YGL096W D 0.804
fgenesh1_pg.C_chr_3000478 Mycosphaerella graminicola fgenesh1_pg.C_chr_3000478 I 0.608
NDAI_0I01320 Naumovozyma dairenensis NDAI_0I01320 I 0.751
O9G_002924 Rozella allomycis O9G_002924 I 0.623
PAS_chr3_0590 Komagataella pastoris PAS_chr3_0590 I 0.701
SEPMUDRAFT_148705 Sphaerulina musiva SEPMUDRAFT_148705 I 0.628
SKUD_191904 Saccharomyces kudriavzevii SKUD_191904 I 0.768
SU7_3505 Saccharomyces arboricola SU7_3505 I 0.867
TBLA_0C03740 Tetrapisispora blattae TBLA_0C03740 I 0.768
TDEL_0F01810 Torulaspora delbrueckii TDEL_0F01810 I 0.821
TPHA_0B02580 Tetrapisispora phaffii TPHA_0B02580 I 0.792
ZBAI_04266 Zygosaccharomyces bailii ZBAI_04266 I 0.841
ZBAI_07775 Zygosaccharomyces bailii ZBAI_07775 I 0.841
ZYRO0G22044g Zygosaccharomyces rouxii ZYRO0G22044g I 0.852
NCAS_0H01130 Naumovozyma castellii NCAS_0H01130 I 0.776
Scas_Contig597.15 Saccharomyces castellii Scas_Contig597.15 I 0.776
21608_YPL177C Saccharomyces mikatae 21608_YPL177C I 0.867
22207_YPL177C Saccharomyces paradoxus 22207_YPL177C I 0.867
24630_YPL177C Saccharomyces bayanus 24630_YPL177C I 0.867
7936_YGL096W Saccharomyces mikatae 7936_YGL096W I 0.667
8079_YGL096W Saccharomyces bayanus 8079_YGL096W I 0.790
8695_YGL096W Saccharomyces paradoxus 8695_YGL096W I 0.804
KLTH0H05236g Kluyveromyces thermotolerans KLTH0H05236g I 0.640
Kwal_11092 Kluyveromyces waltii Kwal_11092 I 0.653
SAKL0A05610g Lachancea kluyveri SAKL0A05610g I 0.653
XP_002492817.1 Pichia pastoris XP_002492817.1 I 0.701
nRc.2.0.1.g06302 Romanomermis culicivorax nRc.2.0.1.g06302 I 0.650
HPODL_01870 Ogataea parapolymorpha HPODL_01870 I 0.679
PTSG_05211 Salpingoeca rosetta PTSG_05211 I 0.631
AACERI_AaceriAFL049C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAFL049C I 0.758
AAEL014550 Aedes aegypti AAEL014550 I 0.600
ADAC004901 Anopheles darlingi ADAC004901 I 0.600
AGOS_AFL049C Ashbya gossypii AGOS_AFL049C I 0.758
AUEXF2481DRAFT_26059 Aureobasidium subglaciale AUEXF2481DRAFT_26059 I 0.653
BAUCODRAFT_212345 Baudoinia compniacensis BAUCODRAFT_212345 I 0.628
CAGL0C01551g Candida glabrata CAGL0C01551g I 0.785
DI09_143p10 Microsporidia sp DI09_143p10 I 0.632
DOTSEDRAFT_23295 Dothistroma septosporum DOTSEDRAFT_23295 I 0.628
Ecym_2247 Eremothecium cymbalariae Ecym_2247 I 0.754
ENSETEG00000011891 Echinops telfairi ENSETEG00000011891 I 0.654
ENSPVAG00000016033 Pteropus vampyrus ENSPVAG00000016033 I 0.617
NDAI_0F02170 Naumovozyma dairenensis NDAI_0F02170 I 0.775
KAFR_0A04370 Kazachstania africana KAFR_0A04370 I 0.804
KAFR_0G03650 Kazachstania africana KAFR_0G03650 I 0.735
KLLA0_B10450g Kluyveromyces lactis KLLA0_B10450g I 0.733
KLTH0H05236g Lachancea thermotolerans KLTH0H05236g I 0.640
KNAG_0F02210 Kazachstania naganishii KNAG_0F02210 I 0.796
KNAG_0M00500 Kazachstania naganishii KNAG_0M00500 I 0.640
Kpol_1036p56 Vanderwaltozyma polyspora Kpol_1036p56 I 0.789
KUCA_T00004797001 Kuraishia capsulata KUCA_T00004797001 I 0.693
M437DRAFT_13662 Aureobasidium melanogenum M437DRAFT_13662 I 0.653
M438DRAFT_396225 Aureobasidium pullulans M438DRAFT_396225 I 0.653
Mycgr3G91768 Zymoseptoria tritici Mycgr3G91768 I 0.608
CAOG_08013 Capsaspora owczarzaki CAOG_08013 I 0.680