Alligator_sinensis_CCG001365.1 (Alligator sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Alligator_sinensis_CCG001365.1 T225154_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.751 0.500
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.751 0.500
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.751 0.500
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.751 0.500
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.751 0.500
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.751 0.500
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.751 0.500
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.751 0.500
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.751 0.500
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.720 0.413
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.720 0.413
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.720 0.413
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG001365.1 Homeodomain 61 106

Links

Other Homeodomain family TFs
Other Alligator sinensis TFs

1227 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATF4 Homo sapiens ENSG00000128272 D
Atf4 Mus musculus ENSMUSG00000042406 D
ENSPSIG00000011085 Pelodiscus sinensis ENSPSIG00000011085 I
ATF4 Tupaia belangeri ENSTBEG00000005052 I
ENSSTOG00000025644 Ictidomys tridecemlineatus ENSSTOG00000025644 I
ENSSTOG00000025355 Ictidomys tridecemlineatus ENSSTOG00000025355 I
ENSSTOG00000024459 Ictidomys tridecemlineatus ENSSTOG00000024459 I
ATF4 Sus scrofa ENSSSCG00000000084 I
ENSSHAG00000014069 Sarcophilus harrisii ENSSHAG00000014069 I
Atf4 Rattus norvegicus ENSRNOG00000017801 I
ATF4 Pteropus vampyrus ENSPVAG00000015476 I
ATF4 Pan troglodytes ENSPTRG00000014398 I
ATF4 Taeniopygia guttata ENSTGUG00000010225 I
ENSPPYG00000011842 Pongo abelii ENSPPYG00000011842 I
ENSPFOG00000006088 Poecilia formosa ENSPFOG00000006088 I
ENSPFOG00000005452 Poecilia formosa ENSPFOG00000005452 I
ATF4 Procavia capensis ENSPCAG00000004089 I
ENSPANG00000025194 Papio anubis ENSPANG00000025194 I
ATF4 Oryzias latipes ENSORLG00000013424 I
atf4a Oryzias latipes ENSORLG00000010649 I
ATF4 Ochotona princeps ENSOPRG00000010583 I
ENSONIG00000013091 Oreochromis niloticus ENSONIG00000013091 I
Cmyd_10007892 Chelonia mydas Cmyd_10007892 I
atf4.L Xenopus laevis XB-GENE-983847 I
atf4 Xenopus tropicalis XB-GENE-983841 I
atf4.S Xenopus laevis XB-GENE-6251859 I
Tal_R009484 Tyto alba Tal_R009484 I
Pvit_04694 Pogona vitticeps Pvit_04694 I
Ogr14426 Ophisaurus gracilis Ogr14426 I
Gfo_R004722 Geospiza fortis Gfo_R004722 I
ENSP00000384587 Macaca fascicularis ENSP00000384587 I
ENSBTAP00000023213-D1 Bos grunniens ENSBTAP00000023213-D1 I
ATF4 Otolemur garnettii ENSOGAG00000033566 I
Brh_R011254 Buceros rhinoceros Brh_R011254 I
Alligator_sinensis_CCG008004.1 Alligator sinensis Alligator_sinensis_CCG008004.1 I
Afo_R007931 Aptenodytes forsteri Afo_R007931 I
Aan_R011605 Calypte anna Aan_R011605 I
ENSXMAG00000008039 Xiphophorus maculatus ENSXMAG00000008039 I
ENSXMAG00000002653 Xiphophorus maculatus ENSXMAG00000002653 I
ATF4 Tursiops truncatus ENSTTRG00000014581 I
atf4a Takifugu rubripes ENSTRUG00000001898 I
atf4a Tetraodon nigroviridis ENSTNIG00000000373 I
atf4b Danio rerio ENSDARG00000038141 I
ATF4 Gallus gallus ENSGALG00000012135 I
atf4a Gasterosteus aculeatus ENSGACG00000019842 I
ATF4 Felis catus ENSFCAG00000009288 I
ENSFALG00000012313 Ficedula albicollis ENSFALG00000012313 I
ATF4 Equus caballus ENSECAG00000006931 I
Atf4 Dipodomys ordii ENSDORG00000004952 I
ENSDNOG00000046837 Dasypus novemcinctus ENSDNOG00000046837 I
ENSDNOG00000030854 Dasypus novemcinctus ENSDNOG00000030854 I
atf4a Danio rerio ENSDARG00000039515 I
ENSGGOG00000010115 Gorilla gorilla ENSGGOG00000010115 I
ENSCSAG00000006330 Chlorocebus sabaeus ENSCSAG00000006330 I
ATF4 Cavia porcellus ENSCPOG00000022485 I
ATF4 Callithrix jacchus ENSCJAG00000002594 I
ATF4 Choloepus hoffmanni ENSCHOG00000008739 I
ATF4 Canis familiaris ENSCAFG00000001324 I
ATF4 Bos taurus ENSBTAG00000017462 I
ENSAPLG00000001773 Anas platyrhynchos ENSAPLG00000001773 I
ENSAMXG00000011467 Astyanax mexicanus ENSAMXG00000011467 I
ENSAMEG00000010932 Ailuropoda melanoleuca ENSAMEG00000010932 I
ENSMICG00000011448 Microcebus murinus ENSMICG00000011448 I
ATF4 Anolis carolinensis ENSACAG00000007573 I
ENSOARG00000016775 Ovis aries ENSOARG00000016775 I
ATF4 Ornithorhynchus anatinus ENSOANG00000011026 I
ENSNLEG00000015257 Nomascus leucogenys ENSNLEG00000015257 I
ENSMPUG00000013386 Mustela putorius furo ENSMPUG00000013386 I
ENSMPUG00000009865 Mustela putorius furo ENSMPUG00000009865 I
ATF4 Monodelphis domestica ENSMODG00000009380 I
ENSMMUG00000004499 Macaca mulatta ENSMMUG00000004499 I
ENSMLUG00000027798 Myotis lucifugus ENSMLUG00000027798 I
ENSONIG00000008552 Oreochromis niloticus ENSONIG00000008552 I
ATF4 Meleagris gallopavo ENSMGAG00000012387 I
ENSMEUG00000011209 Macropus eugenii ENSMEUG00000011209 I
ENSLOCG00000011103 Lepisosteus oculatus ENSLOCG00000011103 I
ATF4 Loxodonta africana ENSLAFG00000012020 I
ENSLACG00000003943 Latimeria chalumnae ENSLACG00000003943 I
ENSGMOG00000018039 Gadus morhua ENSGMOG00000018039 I
ENSGMOG00000014904 Gadus morhua ENSGMOG00000014904 I
ENSGGOG00000024022 Gorilla gorilla ENSGGOG00000024022 I