30075.m001183 (Ricinus communis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 30075.m001183 T227000_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.802 0.930
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.802 0.930
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.802 0.930
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.797 0.895
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.797 0.895
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30075.m001183 Homeodomain 21 81

Links

Other Homeodomain family TFs
Other Ricinus communis TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MIG3 Saccharomyces cerevisiae YER028C D
CAGL0K09372g Candida glabrata CAGL0K09372g I
KAFR_0I02370 Kazachstania africana KAFR_0I02370 I
NCAS_0E00610 Naumovozyma castellii NCAS_0E00610 I
NDAI_0I02900 Naumovozyma dairenensis NDAI_0I02900 I
SKUD_125302 Saccharomyces kudriavzevii SKUD_125302 I
SKUD_175702 Saccharomyces kudriavzevii SKUD_175702 I
TBLA_0C04880 Tetrapisispora blattae TBLA_0C04880 I
TDEL_0D05860 Torulaspora delbrueckii TDEL_0D05860 I
TPHA_0D03400 Tetrapisispora phaffii TPHA_0D03400 I
ZYRO0E08426g Zygosaccharomyces rouxii ZYRO0E08426g I
Scas_Contig712.42 Saccharomyces castellii Scas_Contig712.42 I
6354_YER028C Saccharomyces bayanus 6354_YER028C I
7028_YGL209W Saccharomyces mikatae 7028_YGL209W I
7577_YGL209W Saccharomyces paradoxus 7577_YGL209W I
8566_YGL209W Saccharomyces bayanus 8566_YGL209W I