cassava4525.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava4525.m1 T227141_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.818 0.804
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.818 0.804
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.817 0.786
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.817 0.786
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.815 0.786
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.815 0.786
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.774 0.714
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.744 0.625
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.744 0.625
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.742 0.732
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.742 0.732
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.742 0.732
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.742 0.714
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.731 0.679
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.731 0.679
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.731 0.679
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.731 0.679
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.725 0.679
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.725 0.679
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.725 0.679
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.725 0.679
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.624 0.571
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.606 0.607
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.606 0.607
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.599 0.607
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.599 0.607
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.599 0.607
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava4525.m1 Homeodomain 55 110

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

790 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
hox12 Ciona intestinalis ENSCING00000007040 D
e_gw.260.37.1 Branchiostoma floridae e_gw.260.37.1 I
TRE_0000208301 Trichobilharzia regenti TRE_0000208301 I
T265_10106 Opisthorchis viverrini T265_10106 I
RSKR_0000904600 Rhabditophanes kr3021 RSKR_0000904600 I
PTRK_0000303300 Parastrongyloides trichosuri PTRK_0000303300 I
GPLIN_000726000 Globodera pallida GPLIN_000726000 I
csin103306 Clonorchis sinensis csin103306 I
SNAPOd2T00025381001 Oikopleura dioica SNAPOd2T00025381001 I
SNAPOd2T00003836001 Oikopleura dioica SNAPOd2T00003836001 I
SMU15029209 Schmidtea mediterranea SMU15029209 I
Sakowv30025348m.g Saccoglossus kowalevskii Sakowv30025348m.g I
Sakowv30000860m.g Saccoglossus kowalevskii Sakowv30000860m.g I
gw.260.84.1 Branchiostoma floridae gw.260.84.1 I
e_gw.260.36.1 Branchiostoma floridae e_gw.260.36.1 I
Ogr12572 Ophisaurus gracilis Ogr12572 I
SPU_002631 Strongylocentrotus purpuratus SPU_002631 I
SPU_000388 Strongylocentrotus purpuratus SPU_000388 I
VSX2 Sus scrofa ENSSSCG00000002363 I
ENSPMAG00000010089 Petromyzon marinus ENSPMAG00000010089 I
ENSNLEG00000017680 Nomascus leucogenys ENSNLEG00000017680 I
ENSFALG00000014896 Ficedula albicollis ENSFALG00000014896 I
ENSCSAVG00000008685 Ciona savignyi ENSCSAVG00000008685 I
ENSCSAVG00000003530 Ciona savignyi ENSCSAVG00000003530 I
hox10 Ciona intestinalis ENSCING00000001031 I
CGI_10027385 Crassostrea gigas CGI_10027385 N
Ocbimv22015181m.g Octopus bimaculoides Ocbimv22015181m.g N
LotgiG100031 Lottia gigantea LotgiG100031 N