Lus10016110.g (Linum usitatissimum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Lus10016110.g T228873_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.765 0.707
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.680 0.537
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.680 0.537
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.680 0.537
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.680 0.537
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.642 0.634
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10016110 Homeodomain 306 348

Links

Other Homeodomain family TFs
Other Linum usitatissimum TFs

1020 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SCHCODRAFT_258883 Schizophyllum commune SCHCODRAFT_258883 D 0.000
PAXINDRAFT_86770 Paxillus involutus PAXINDRAFT_86770 I 0.000
fgenesh2_pg.C_scaffold_1000086 Heterobasidion annosum fgenesh2_pg.C_scaffold_1000086 I 0.000
fgenesh1_pg.C_scaffold_18000061 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_18000061 I 0.000
SERLA73DRAFT_115823 Serpula lacrymans SERLA73DRAFT_115823 I 0.000
POSPLDRAFT_106184 Postia placenta POSPLDRAFT_106184 I 0.000
PILCRDRAFT_820718 Piloderma croceum PILCRDRAFT_820718 I 0.000
PHLGIDRAFT_79048 Phlebiopsis gigantea PHLGIDRAFT_79048 I 0.000
PHACADRAFT_169221 Phanerochaete carnosa PHACADRAFT_169221 I 0.000
PAXRUDRAFT_128990 Paxillus rubicundulus PAXRUDRAFT_128990 I 0.000
BN946_scf184576.g4 Trametes cinnabarina BN946_scf184576.g4 I 0.000
Moror_4577 Moniliophthora roreri Moror_4577 I 0.000
CC1G_00679 Coprinopsis cinerea CC1G_00679 I 0.000
M378DRAFT_6115 Amanita muscaria M378DRAFT_6115 I 0.000
LACBIDRAFT_291829 Laccaria bicolor LACBIDRAFT_291829 I 0.000
CERSUDRAFT_79927 Ceriporiopsis subvermispora CERSUDRAFT_79927 I 0.000
K443DRAFT_678969 Laccaria amethystina K443DRAFT_678969 I 0.000
GLOTRDRAFT_30797 Gloeophyllum trabeum GLOTRDRAFT_30797 I 0.000
M413DRAFT_20449 Hebeloma cylindrosporum M413DRAFT_20449 I 0.000
GALMADRAFT_225495 Galerina marginata GALMADRAFT_225495 I 0.000
FOMPIDRAFT_1133812 Fomitopsis pinicola FOMPIDRAFT_1133812 I 0.000
PISMIDRAFT_672010 Pisolithus microcarpus PISMIDRAFT_672010 N 0.000
CY34DRAFT_46380 Suillus luteus CY34DRAFT_46380 N 0.000
SCLCIDRAFT_101722 Scleroderma citrinum SCLCIDRAFT_101722 N 0.000
SCHCODRAFT_114530 Schizophyllum commune SCHCODRAFT_114530 N 0.000
PISMIDRAFT_690687 Pisolithus microcarpus PISMIDRAFT_690687 N 0.000
JAAARDRAFT_75549 Jaapia argillacea JAAARDRAFT_75549 N 0.000
PAXRUDRAFT_129040 Paxillus rubicundulus PAXRUDRAFT_129040 N 0.000
M404DRAFT_998457 Pisolithus tinctorius M404DRAFT_998457 N 0.000