irx2 (Xenopus tropicalis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 XB-GENE-480618 T230440_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.866 0.982
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.866 0.982
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.866 0.982
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.866 0.982
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.866 0.982
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.866 0.982
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.814 0.912
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.814 0.912
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.814 0.912
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.806 0.877
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.806 0.877
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.806 0.877
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.781 0.895
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.780 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH81317 Homeodomain 111 170

Links

Other Homeodomain family TFs
Other Xenopus tropicalis TFs

379 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
STOP1 Arabidopsis thaliana AT1G34370 D
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I
Ciclev10000850m.g Citrus clementina Ciclev10000850m.g I
Carubv10008876m.g Capsella rubella Carubv10008876m.g I
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I
Aquca_017_00778 Aquilegia coerulea Aquca_017_00778 I
mgf000060m Mimulus guttatus mgf000060m I
Cucsa.079940 Cucumis sativus Cucsa.079940 I
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I
cassava22193.valid.m1 Manihot esculenta cassava22193.valid.m1 I
Pm022201 Prunus mume Pm022201 I
Cla016623 Citrullus lanatus Cla016623 I
Ca_04300 Cicer arietinum Ca_04300 I
STOP1 Vitis vinifera VIT_18s0072g00840 I
TRIUR3_13796 Triticum urartu TRIUR3_13796 I
Traes_3DL_0284E68CC1 Triticum aestivum Traes_3DL_0284E68CC1 I
TRAES3BF044200110CFD_g Triticum aestivum TRAES3BF044200110CFD_g I
Traes_3AL_00FAACD5D Triticum aestivum Traes_3AL_00FAACD5D I
TCM_036719 Theobroma cacao TCM_036719 I
PDK_20s1338731g001 Phoenix dactylifera PDK_20s1338731g001 I
Pavir.Ia00191 Panicum virgatum Pavir.Ia00191 I
AMTR_s00017p00086440 Amborella trichopoda AMTR_s00017p00086440 I
PK23301.1 Cannabis sativa PK23301.1 I
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I
Pavir.J14096 Panicum virgatum Pavir.J14096 I
Pavir.J12018 Panicum virgatum Pavir.J12018 I
Pavir.J06328 Panicum virgatum Pavir.J06328 I
Pavir.J01834 Panicum virgatum Pavir.J01834 I
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I
orange1.1g009831m.g Citrus sinensis orange1.1g009831m.g I
MDP0000807856 Malus domestica MDP0000807856 I
MDP0000551046 Malus domestica MDP0000551046 I
MDP0000453148 Malus domestica MDP0000453148 I
MDP0000199559 Malus domestica MDP0000199559 I
MDP0000141403 Malus domestica MDP0000141403 I
Lus10009435.g Linum usitatissimum Lus10009435.g I
Gorai.006G131700 Gossypium raimondii Gorai.006G131700 I
GLYMA20G31650 Glycine max GLYMA20G31650 I
OB03G47410 Oryza brachyantha OB03G47410 I
OB01G47470 Oryza brachyantha OB01G47470 I
MLOC_10987 Hordeum vulgare MLOC_10987 I
LPERR03G34390 Leersia perrieri LPERR03G34390 I
LPERR01G33350 Leersia perrieri LPERR01G33350 I
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I
GSMUA_Achr10G15970_001 Musa acuminata GSMUA_Achr10G15970_001 I
GRMZM2G129428 Zea mays GRMZM2G129428 I
GRMZM2G075956 Zea mays GRMZM2G075956 I
OBART01G38810 Oryza barthii OBART01G38810 I
GLYMA16G27280 Glycine max GLYMA16G27280 I
GLYMA10G35940 Glycine max GLYMA10G35940 I
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I
F775_04088 Aegilops tauschii F775_04088 I
BRADI2G56320 Brachypodium distachyon BRADI2G56320 I
Bra040971 Brassica rapa Bra040971 I
Bo8g027000 Brassica oleracea Bo8g027000 I
BGIOSGA004888 Oryza indica BGIOSGA004888 I
POPTR_0019s11520 Populus trichocarpa POPTR_0019s11520 I
Si036555m.g Setaria italica Si036555m.g I
Si001053m.g Setaria italica Si001053m.g I
SELMODRAFT_68340 Selaginella moellendorffii SELMODRAFT_68340 I
SELMODRAFT_58361 Selaginella moellendorffii SELMODRAFT_58361 I
SELMODRAFT_58350 Selaginella moellendorffii SELMODRAFT_58350 I
SELMODRAFT_48272 Selaginella moellendorffii SELMODRAFT_48272 I
Sb03g041170 Sorghum bicolor Sb03g041170 I
Sb01g001950 Sorghum bicolor Sb01g001950 I
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I
Solyc06g065440.1 Solanum lycopersicum Solyc06g065440.1 I
PGSC0003DMG400026081 Solanum tuberosum PGSC0003DMG400026081 I
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I
OS01G0871200 Oryza sativa OS01G0871200 I
ORUFI01G42150 Oryza rufipogon ORUFI01G42150 I
ORGLA01G0326400 Oryza glaberrima ORGLA01G0326400 I
OPUNC01G37530 Oryza punctata OPUNC01G37530 I
ONIVA01G43630 Oryza nivara ONIVA01G43630 I
OLONG_020555 Oryza longistaminata OLONG_020555 I