chr4.CM0244.10.nd (Lotus japonicus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 chr4.CM0244.10.nd T230818_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_2g038000
M02141_2.00 		Medicago truncatula
NDNYWNNNNN
NNNNNWRNHN		 PBM
Weirauch et al.(2014)
pTH6339 		0.600 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr4.CM0244.10.nd Homeodomain 339 395

Links

Other Homeodomain family TFs
Other Lotus japonicus TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_2g038000 Medicago truncatula MTR_2g038000 D 0.600
PRHA Arabidopsis lyrata scaffold_701235.1 I 0.624
Thhalv10024489m.g Eutrema salsugineum Thhalv10024489m.g I 0.667
Gorai.009G002500 Gossypium raimondii Gorai.009G002500 I 0.668
gene17249-v1.0-hybrid Fragaria vesca gene17249-v1.0-hybrid I 0.664
Eucgr.C00114 Eucalyptus grandis Eucgr.C00114 I 0.677
Carubv10004175m.g Capsella rubella Carubv10004175m.g I 0.657
Cagra.0268s0009 Capsella grandiflora Cagra.0268s0009 I 0.657
Bostr.7867s0841 Boechera stricta Bostr.7867s0841 I 0.667
mgf003961m Mimulus guttatus mgf003961m I 0.638
cassava27173.m1 Manihot esculenta cassava27173.m1 I 0.693
29671.m000294 Ricinus communis 29671.m000294 I 0.661
Pm008905 Prunus mume Pm008905 I 0.684
Ca_08838 Cicer arietinum Ca_08838 I 0.645
Solyc07g008730.1 Solanum lycopersicum Solyc07g008730.1 I 0.652
PRH Arabidopsis thaliana AT4G29940 I 0.614
PRUPE_ppa023964mg Prunus persica PRUPE_ppa023964mg I 0.684
PGSC0003DMG400028740 Solanum tuberosum PGSC0003DMG400028740 I 0.652
GLYMA17G06690 Glycine max GLYMA17G06690 I 0.665
GLYMA15G17956 Glycine max GLYMA15G17956 I 0.631
GLYMA13G00540 Glycine max GLYMA13G00540 I 0.661
GLYMA09G06730 Glycine max GLYMA09G06730 I 0.663
Bra011153 Brassica rapa Bra011153 I 0.635
Bra010310 Brassica rapa Bra010310 I 0.657
Bo3g175850 Brassica oleracea Bo3g175850 I 0.657
Bo1g014710 Brassica oleracea Bo1g014710 I 0.627
POPTR_0018s13920 Populus trichocarpa POPTR_0018s13920 N 0.683
POPTR_0006s07520 Populus trichocarpa POPTR_0006s07520 N 0.682
SapurV1A.0140s0170 Salix purpurea SapurV1A.0140s0170 N 0.640