CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ACUA016236
(
Anopheles culicifacies
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
ACUA016236
T231496_2.00
Vectorbase (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NEMVEDRAFT_v1g136480
M02147_2.00
Nematostella vectensis
NNNNNNNNNN
NNNNNNNNNN
PBM
Weirauch et al.(2014)
pTH6103
0.716
0.579
Rax
M00426_2.00
Mus musculus
NNTAATTRN
NYAATTANN
PBM
Berger et al.(2008)
Rax_3443
0.607
0.684
RAX
M03149_2.00
Homo sapiens
NHTAATTRNN
NNYAATTADN
SELEX
Jolma et al.(2013)
RAX_1
0.607
0.684
Rx
M03840_2.00
Drosophila melanogaster
BTAATTRV
BYAATTAV
SELEX
Nitta et al.(2015)
Rx_1
0.607
0.684
Rx
M03841_2.00
Drosophila melanogaster
NTAATBNSATTAN
NTAATSNVATTAN
SELEX
Nitta et al.(2015)
Rx_2
0.607
0.684
RAX
M05142_2.00
Homo sapiens
YYAATTRN
NYAATTRR
SELEX
Yin et al.(2017)
RAX_eDBD_HT-SELEX
0.607
0.684
Rx
M06520_2.00
Drosophila melanogaster
YTAATTR
YAATTAR
B1H
Mathelier et al.(2014)
MA0202.1
0.607
0.684
Rx
M06317_2.00
Drosophila melanogaster
VYTAATTR
YAATTARB
B1H
Zhu et al.(2011)
Rx_Cell_FBgn0020617
0.607
0.684
Rx
M06318_2.00
Drosophila melanogaster
HTAATTR
YAATTAD
B1H
Zhu et al.(2011)
Rx_SOLEXA_FBgn0020617
0.607
0.684
Rax
M10773_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RAX_04
0.607
0.684
RAX
M05143_2.00
Homo sapiens
NTAAYRNN
NNYRTTAN
SELEX
Yin et al.(2017)
RAX_eDBD_Methyl-HT-SELEX_1
0.607
0.684
RAX
M05144_2.00
Homo sapiens
YYAATTRN
NYAATTRR
SELEX
Yin et al.(2017)
RAX_eDBD_Methyl-HT-SELEX_2
0.607
0.684
Alx3
M00402_2.00
Mus musculus
WAATNDN
NHNATTW
PBM
Berger et al.(2008)
Alx3_3418
0.605
0.754
ALX3
M03172_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
ALX3_1
0.605
0.754
ALX3
M03173_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
ALX3_2
0.605
0.754
ALX3
M03174_2.00
Homo sapiens
NTAATYNRATTAN
NTAATYNRATTAN
SELEX
Jolma et al.(2013)
ALX3_3
0.605
0.754
ALX3
M05195_2.00
Homo sapiens
NTAATTRR
YYAATTAN
SELEX
Yin et al.(2017)
ALX3_eDBD_HT-SELEX
0.605
0.754
ALX3
M05198_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ALX3_FL_HT-SELEX
0.605
0.754
ALX3
M05196_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ALX3_eDBD_Methyl-HT-SELEX_1
0.605
0.754
ALX3
M05197_2.00
Homo sapiens
NTAAYBHN
NDVRTTAN
SELEX
Yin et al.(2017)
ALX3_eDBD_Methyl-HT-SELEX_2
0.605
0.754
ALX3
M05199_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ALX3_FL_Methyl-HT-SELEX_1
0.605
0.754
ALX3
M05200_2.00
Homo sapiens
NTAAYGHN
NDCRTTAN
SELEX
Yin et al.(2017)
ALX3_FL_Methyl-HT-SELEX_2
0.605
0.754
Alx4
M00487_2.00
Mus musculus
NTAATDDN
NHHATTAN
PBM
Berger et al.(2008)
Alx4_1744
0.605
0.737
ALX4
M03079_2.00
Homo sapiens
NTAATYNRRTTAN
NTAAYYNRATTAN
SELEX
Jolma et al.(2013)
ALX4_1
0.605
0.737
Alx4
M03278_2.00
Mus musculus
NTAATYNRATTAN
NTAATYNRATTAN
SELEX
Jolma et al.(2013)
Alx4_1
0.605
0.737
ALX4
M04917_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ALX4_eDBD_HT-SELEX
0.605
0.737
ALX4
M10637_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ALX4_01
0.605
0.737
ALX4
M04918_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ALX4_eDBD_Methyl-HT-SELEX_1
0.605
0.737
ALX4
M04919_2.00
Homo sapiens
NTWAYGHN
NDCRTWAN
SELEX
Yin et al.(2017)
ALX4_eDBD_Methyl-HT-SELEX_2
0.605
0.737
RAX2
M03214_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
RAXL1_1
0.603
0.649
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ACUA016236-PA
Homeodomain
124
180
RRNRTTFSPEQLEELEKEFDKSHYPCVSTRERLASRTSLSEARVQVWFSNRRAKWRR
Links
Other
Homeodomain
family TFs
Other
Anopheles culicifacies
TFs
476 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aquca_014_00175
Aquilegia coerulea
Aquca_014_00175
N
0.000
LjT26J05.10.nc
Lotus japonicus
LjT26J05.10.nc
N
0.000
LjT15C06.70.nc
Lotus japonicus
LjT15C06.70.nc
N
0.000
SapurV1A.0105s0110
Salix purpurea
SapurV1A.0105s0110
N
0.000
orange1.1g011012m.g
Citrus sinensis
orange1.1g011012m.g
N
0.000
MDP0000884524
Malus domestica
MDP0000884524
N
0.000
MDP0000319342
Malus domestica
MDP0000319342
N
0.000
Lus10028056.g
Linum usitatissimum
Lus10028056.g
N
0.000
Lus10008316.g
Linum usitatissimum
Lus10008316.g
N
0.000
Gorai.010G048800
Gossypium raimondii
Gorai.010G048800
N
0.000
Gorai.009G244200
Gossypium raimondii
Gorai.009G244200
N
0.000
gene11137-v1.0-hybrid
Fragaria vesca
gene11137-v1.0-hybrid
N
0.000
evm.TU.supercontig_36.32
Carica papaya
evm.TU.supercontig_36.32
N
0.000
Eucgr.L03490
Eucalyptus grandis
Eucgr.L03490
N
0.000
Ciclev10000940m.g
Citrus clementina
Ciclev10000940m.g
N
0.000
GLYMA04G43090
Glycine max
GLYMA04G43090
N
0.000
cassava44367.m1
Manihot esculenta
cassava44367.m1
N
0.000
cassava32027.m1
Manihot esculenta
cassava32027.m1
N
0.000
29908.m006159
Ricinus communis
29908.m006159
N
0.000
Pm004863
Prunus mume
Pm004863
N
0.000
Ca_26279
Cicer arietinum
Ca_26279
N
0.000
VIT_18s0001g03310
Vitis vinifera
VIT_18s0001g03310
N
0.000
TCM_035069
Theobroma cacao
TCM_035069
N
0.000
Solyc11g013150.1
Solanum lycopersicum
Solyc11g013150.1
N
0.000
PRUPE_ppa018977mg
Prunus persica
PRUPE_ppa018977mg
N
0.000
POPTR_0005s15900
Populus trichocarpa
POPTR_0005s15900
N
0.000
POPTR_0002s08660
Populus trichocarpa
POPTR_0002s08660
N
0.000
PGSC0003DMG400012071
Solanum tuberosum
PGSC0003DMG400012071
N
0.000
MTR_3g072710
Medicago truncatula
MTR_3g072710
N
0.000
GLYMA06G11610
Glycine max
GLYMA06G11610
N
0.000