AFAF001542 (Anopheles farauti)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 AFAF001542 T231709_2.00 Vectorbase (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.827 0.652
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.827 0.652
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.827 0.652
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.827 0.652
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.827 0.652
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.827 0.652
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.827 0.652
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.827 0.652
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.827 0.652
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.720 0.391
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.720 0.391
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.720 0.391
Rx
M03840_2.00 		Drosophila melanogaster
BTAATTRV
BYAATTAV		 SELEX
Nitta et al.(2015)
Rx_1 		0.377 1.000
Rx
M03841_2.00 		Drosophila melanogaster
NTAATBNSATTAN
NTAATSNVATTAN		 SELEX
Nitta et al.(2015)
Rx_2 		0.377 1.000
Rx
M06520_2.00 		Drosophila melanogaster
YTAATTR
YAATTAR		 B1H
Mathelier et al.(2014)
MA0202.1 		0.377 1.000
Rx
M06317_2.00 		Drosophila melanogaster
VYTAATTR
YAATTARB		 B1H
Zhu et al.(2011)
Rx_Cell_FBgn0020617 		0.377 1.000
Rx
M06318_2.00 		Drosophila melanogaster
HTAATTR
YAATTAD		 B1H
Zhu et al.(2011)
Rx_SOLEXA_FBgn0020617 		0.377 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AFAF001542-PA Homeodomain 241 286

Links

Other Homeodomain family TFs
Other Anopheles farauti TFs

1307 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_13412 Cicer arietinum Ca_13412 N 0.000
POPTR_0010s19600 Populus trichocarpa POPTR_0010s19600 N 0.000
PRUPE_ppa001277mg Prunus persica PRUPE_ppa001277mg N 0.000
Sb03g005310 Sorghum bicolor Sb03g005310 N 0.000
Si000223m.g Setaria italica Si000223m.g N 0.000
Solyc06g051570.2 Solanum lycopersicum Solyc06g051570.2 N 0.000
TCM_042496 Theobroma cacao TCM_042496 N 0.000
Traes_3AS_496047B73 Triticum aestivum Traes_3AS_496047B73 N 0.000
ATNFXL2 Vitis vinifera VIT_13s0067g00920 N 0.000
OS01G0158900 Oryza sativa OS01G0158900 N 0.000
Pm018929 Prunus mume Pm018929 N 0.000
cassava20878.m1 Manihot esculenta cassava20878.m1 N 0.000
Cucsa.136670 Cucumis sativus Cucsa.136670 N 0.000
mgf001689m Mimulus guttatus mgf001689m N 0.000
Aquca_045_00093 Aquilegia coerulea Aquca_045_00093 N 0.000
Eucgr.J00206 Eucalyptus grandis Eucgr.J00206 N 0.000
evm.TU.supercontig_19.173 Carica papaya evm.TU.supercontig_19.173 N 0.000
Gorai.010G197800 Gossypium raimondii Gorai.010G197800 N 0.000
OBART01G03880 Oryza barthii OBART01G03880 N 0.000
Bo9g177030 Brassica oleracea Bo9g177030 N 0.000
Bra009123 Brassica rapa Bra009123 N 0.000
GLYMA18G03080 Glycine max GLYMA18G03080 N 0.000
GRMZM2G139369 Zea mays GRMZM2G139369 N 0.000
GSMUA_Achr2G18970_001 Musa acuminata GSMUA_Achr2G18970_001 N 0.000
LPERR01G03530 Leersia perrieri LPERR01G03530 N 0.000
MLOC_4879 Hordeum vulgare MLOC_4879 N 0.000
OB01G13760 Oryza brachyantha OB01G13760 N 0.000
BGIOSGA002351 Oryza indica BGIOSGA002351 N 0.000
OGLUM01G04180 Oryza glumaepatula OGLUM01G04180 N 0.000
OLONG_021562 Oryza longistaminata OLONG_021562 N 0.000
OMERI01G03770 Oryza meridionalis OMERI01G03770 N 0.000
ONIVA01G04320 Oryza nivara ONIVA01G04320 N 0.000
OPUNC01G03540 Oryza punctata OPUNC01G03540 N 0.000
ORGLA01G0034200 Oryza glaberrima ORGLA01G0034200 N 0.000
ORUFI01G03990 Oryza rufipogon ORUFI01G03990 N 0.000