csin108827 (Clonorchis sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 csin108827 T233377_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.696 0.947
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.696 0.947
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.696 0.947
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.688 0.912
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.688 0.912
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.688 0.912
CBG08197
M02064_2.00 		Caenorhabditis briggsae
NNDACDNN
NNHGTHNN		 PBM
Weirauch et al.(2014)
pTH6408 		0.683 0.737
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.675 0.895
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.675 0.895
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.675 0.895
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.675 0.895
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.675 0.895
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.675 0.895
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.662 0.895
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.651 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
csin108827 Homeodomain 339 398

Links

Other Homeodomain family TFs
Other Clonorchis sinensis TFs

377 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10002239m.g Citrus clementina Ciclev10002239m.g I
PK29071.1 Cannabis sativa PK29071.1 I
SapurV1A.0017s0390 Salix purpurea SapurV1A.0017s0390 I
orange1.1g025351m.g Citrus sinensis orange1.1g025351m.g I
MDP0000894463 Malus domestica MDP0000894463 I
MDP0000823270 Malus domestica MDP0000823270 I
MDP0000784297 Malus domestica MDP0000784297 I
MDP0000641708 Malus domestica MDP0000641708 I
MDP0000480596 Malus domestica MDP0000480596 I
MDP0000477900 Malus domestica MDP0000477900 I
Lus10032764.g Linum usitatissimum Lus10032764.g I
Lus10021762.g Linum usitatissimum Lus10021762.g I
Gorai.009G208900 Gossypium raimondii Gorai.009G208900 I
evm.TU.supercontig_376.4 Carica papaya evm.TU.supercontig_376.4 I
GLYMA04G03910 Glycine max GLYMA04G03910 I
Aquca_083_00054 Aquilegia coerulea Aquca_083_00054 I
mgf006151m Mimulus guttatus mgf006151m I
Cucsa.123440 Cucumis sativus Cucsa.123440 I
cassava46434.m1 Manihot esculenta cassava46434.m1 I
cassava16103.m1 Manihot esculenta cassava16103.m1 I
30170.m013927 Ricinus communis 30170.m013927 I
Pm005220 Prunus mume Pm005220 I
Ca_01522 Cicer arietinum Ca_01522 I
PRUPE_ppa010735mg Prunus persica PRUPE_ppa010735mg I
POPTR_0014s03440 Populus trichocarpa POPTR_0014s03440 I
POPTR_0002s13030 Populus trichocarpa POPTR_0002s13030 I
GLYMA06G04010 Glycine max GLYMA06G04010 I