scaffold360-EXSNAP2012.9 (Pristionchus exspectatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 scaffold360-EXSNAP2012.9 T235978_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.814 0.630
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.814 0.630
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.814 0.630
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.814 0.630
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.814 0.630
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.814 0.630
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.814 0.630
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.814 0.630
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.814 0.630
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.720 0.413
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.720 0.413
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.720 0.413
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold360-EXSNAP2012.9 Homeodomain 87 132

Links

Other Homeodomain family TFs
Other Pristionchus exspectatus TFs

1246 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Hr83 Drosophila melanogaster FBgn0037436 D
SMU15015045 Schmidtea mediterranea SMU15015045 I
AMEM012481 Anopheles merus AMEM012481 I
AMEC011506 Anopheles melas AMEC011506 I
AMAM005986 Anopheles maculatus AMAM005986 I
AFUN005541 Anopheles funestus AFUN005541 I
AEPI004731 Anopheles epiroticus AEPI004731 I
AATE004130 Anopheles atroparvus AATE004130 I
AARA006703 Anopheles arabiensis AARA006703 I
AALB009657 Anopheles albimanus AALB009657 I
AMIN000835 Anopheles minimus AMIN000835 I
LCUP007875 Lucilia cuprina LCUP007875 I
HHAL007294-PA Halyomorpha halys HHAL007294-PA I
Sakowv30002570m.g Saccoglossus kowalevskii Sakowv30002570m.g I
Ocbimv22005486m.g Octopus bimaculoides Ocbimv22005486m.g I
Hsal_03084--XP_001121181.1_APIME Harpegnathos saltator Hsal_03084--XP_001121181.1_APIME I
nhr-239 Caenorhabditis elegans WBGene00021848 I
tetur08g01210 Tetranychus urticae tetur08g01210 I
tetur01g07700 Tetranychus urticae tetur01g07700 I
TC010460 Tribolium castaneum TC010460 I
BXY_0039800 Bursaphelenchus xylophilus BXY_0039800 I
TTRE_0000057901 Trichuris trichiura TTRE_0000057901 I
TMUE_s0114001400 Trichuris muris TMUE_s0114001400 I
RSKR_0000792200 Rhabditophanes kr3021 RSKR_0000792200 I
RSKR_0000433000 Rhabditophanes kr3021 RSKR_0000433000 I
nRc.2.0.1.g16033 Romanomermis culicivorax nRc.2.0.1.g16033 I
HPLM_0002159101 Haemonchus placei HPLM_0002159101 I
D918_06154 Trichuris suis D918_06154 I
D917_09121 Trichinella nativa D917_09121 I
SPU_012586 Strongylocentrotus purpuratus SPU_012586 I
ACOC_0001282001 Angiostrongylus costaricensis ACOC_0001282001 I
ACAC_0001082701 Angiostrongylus cantonensis ACAC_0001082701 I
PPAI010314 Phlebotomus papatasi PPAI010314 I
MDOA009347 Musca domestica MDOA009347 I
LLOJ001302 Lutzomyia longipalpis LLOJ001302 I
LLOJ000718 Lutzomyia longipalpis LLOJ000718 I
ASTEI03427 Anopheles stephensi ASTEI03427 I
AQUA004261 Anopheles quadriannulatus AQUA004261 I
CRE25188 Caenorhabditis remanei CRE25188 I
GL22067 Drosophila persimilis FBgn0159659 I
GI24589 Drosophila mojavensis FBgn0147311 I
GH18089 Drosophila grimshawi FBgn0125557 I
GG13368 Drosophila erecta FBgn0105640 I
GF16659 Drosophila ananassae FBgn0093680 I
GA10225 Drosophila pseudoobscura FBgn0070284 I
EFV59616 Trichinella spiralis EFV59616 I
DAPPUDRAFT_299738 Daphnia pulex DAPPUDRAFT_299738 I
GM10889 Drosophila sechellia FBgn0165835 I
CPIJ015933 Culex quinquefasciatus CPIJ015933 I
CBN10661 Caenorhabditis brenneri CBN10661 I
CBG09846 Caenorhabditis briggsae CBG09846 I
CapteG177303 Capitella teleta CapteG177303 I
BGIBMGA002000 Bombyx mori BGIBMGA002000 I
AGAP002234 Anopheles gambiae AGAP002234 I
ACYPI48102 Acyrthosiphon pisum ACYPI48102 I
HR83 Aedes aegypti AAEL007350 I
KGM_21528 Danaus plexippus KGM_21528 I
SMAR006023 Strigamia maritima SMAR006023 I
SMAR006008 Strigamia maritima SMAR006008 I
RPRC007025 Rhodnius prolixus RPRC007025 I
PHUM331460 Pediculus humanus PHUM331460 I
NV10871 Nasonia vitripennis NV10871 I
NEMVEDRAFT_v1g114090 Nematostella vectensis NEMVEDRAFT_v1g114090 I
LotgiG132791 Lottia gigantea LotgiG132791 I
L798_08383 Zootermopsis nevadensis L798_08383 I
CpipJ_CPIJ015933 Culex pipiens CpipJ_CPIJ015933 I
ISCW010891 Ixodes scapularis ISCW010891 I
ISCW008659 Ixodes scapularis ISCW008659 I
HMEL012854 Heliconius melpomene HMEL012854 I
HelroG71774 Helobdella robusta HelroG71774 I
HelroG148423 Helobdella robusta HelroG148423 I
GK13826 Drosophila willistoni FBgn0215834 I
GJ22654 Drosophila virilis FBgn0209758 I
GD19868 Drosophila simulans FBgn0191357 I