Bra025608 (Brassica rapa)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 Bra025608 T239865_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFB2B
M06945_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_col_a 		0.339 0.391
HSFB2B
M06946_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_colamp_a 		0.339 0.391
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.320 0.368
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025608.1-P HSF 10 105

Links

Other HSF family TFs
Other Brassica rapa TFs

177 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HSFB2B Arabidopsis thaliana AT4G11660 D 0.339
HSFA4A Arabidopsis thaliana AT4G18880 D 0.320
AMTR_s00069p00068180 Amborella trichopoda AMTR_s00069p00068180 I 0.338
AT1G77570 Arabidopsis thaliana AT1G77570 I 0.347
HSFB1 Arabidopsis thaliana AT4G36990 I 0.326
BGIOSGA026537 Oryza indica BGIOSGA026537 I 0.335
BGIOSGA029403 Oryza indica BGIOSGA029403 I 0.336
Bo1g020010 Brassica oleracea Bo1g020010 I 0.320
Bo3g045370 Brassica oleracea Bo3g045370 I 0.339
Bo3g157380 Brassica oleracea Bo3g157380 I 0.324
Bo4g139200 Brassica oleracea Bo4g139200 I 0.533
Bo4g139630 Brassica oleracea Bo4g139630 I 0.545
Bo7g106320 Brassica oleracea Bo7g106320 I 0.326
Bo7g118320 Brassica oleracea Bo7g118320 I 0.341
Bra000749 Brassica rapa Bra000749 I 0.345
Bra002882 Brassica rapa Bra002882 I 0.329
Bra011735 Brassica rapa Bra011735 I 0.337
Bra012571 Brassica rapa Bra012571 I 0.326
Bra013358 Brassica rapa Bra013358 I 0.320
Bra017800 Brassica rapa Bra017800 I 0.341
Bra025606 Brassica rapa Bra025606 I 0.561
Bra025635 Brassica rapa Bra025635 I 0.549
Bra030021 Brassica rapa Bra030021 I 0.355
Bra030341 Brassica rapa Bra030341 I 0.347
Bra040968 Brassica rapa Bra040968 I 0.338
BRADI4G35780 Brachypodium distachyon BRADI4G35780 I 0.336
F775_19430 Aegilops tauschii F775_19430 I 0.321
AT-HSFA4A Arabidopsis lyrata fgenesh2_kg.7__2405__AT4G18880.1 I 0.320
HSF4 Arabidopsis lyrata fgenesh2_kg.7__342__AT4G36988.1 I 0.326
GLYMA01G39260 Glycine max GLYMA01G39260 I 0.325
GLYMA01G42640 Glycine max GLYMA01G42640 I 0.340
GLYMA09G26510 Glycine max GLYMA09G26510 I 0.328
GLYMA10G38240 Glycine max GLYMA10G38240 I 0.339
GLYMA11G02800 Glycine max GLYMA11G02800 I 0.340
GLYMA11G06010 Glycine max GLYMA11G06010 I 0.325
GLYMA16G32070 Glycine max GLYMA16G32070 I 0.330
GLYMA20G29610 Glycine max GLYMA20G29610 I 0.339
GRMZM2G098696 Zea mays GRMZM2G098696 I 0.337
GRMZM2G164909 Zea mays GRMZM2G164909 I 0.337
GRMZM2G165272 Zea mays GRMZM2G165272 I 0.336
GSMUA_Achr1G03910_001 Musa acuminata GSMUA_Achr1G03910_001 I 0.323
GSMUA_Achr1G07880_001 Musa acuminata GSMUA_Achr1G07880_001 I 0.332
GSMUA_Achr1G16240_001 Musa acuminata GSMUA_Achr1G16240_001 I 0.326
GSMUA_Achr4G19760_001 Musa acuminata GSMUA_Achr4G19760_001 I 0.333
GSMUA_Achr4G29100_001 Musa acuminata GSMUA_Achr4G29100_001 I 0.328
LPERR08G19290 Leersia perrieri LPERR08G19290 I 0.336
LPERR09G13100 Leersia perrieri LPERR09G13100 I 0.334
MLOC_75166 Hordeum vulgare MLOC_75166 I 0.319
MTR_5g010680 Medicago truncatula MTR_5g010680 I 0.334
MTR_5g017470 Medicago truncatula MTR_5g017470 I 0.333
OB08G29340 Oryza brachyantha OB08G29340 I 0.335
OBART08G22550 Oryza barthii OBART08G22550 I 0.336
OGLUM08G23900 Oryza glumaepatula OGLUM08G23900 I 0.335
OGLUM09G17660 Oryza glumaepatula OGLUM09G17660 I 0.334
OMERI08G17470 Oryza meridionalis OMERI08G17470 I 0.335
OMERI09G12670 Oryza meridionalis OMERI09G12670 I 0.336
ONIVA08G25630 Oryza nivara ONIVA08G25630 I 0.335
ONIVA09G18150 Oryza nivara ONIVA09G18150 I 0.336
OPUNC08G20670 Oryza punctata OPUNC08G20670 I 0.335
OPUNC09G15460 Oryza punctata OPUNC09G15460 I 0.336
ORGLA08G0219000 Oryza glaberrima ORGLA08G0219000 I 0.335
ORUFI08G25100 Oryza rufipogon ORUFI08G25100 I 0.335
ORUFI09G18440 Oryza rufipogon ORUFI09G18440 I 0.336
HSFB2B Oryza sativa OS08G0546800 I 0.335
HSFB2C Oryza sativa OS09G0526600 I 0.339
PGSC0003DMG400003053 Solanum tuberosum PGSC0003DMG400003053 I 0.338
PGSC0003DMG400012105 Solanum tuberosum PGSC0003DMG400012105 I 0.338
PGSC0003DMG400014323 Solanum tuberosum PGSC0003DMG400014323 I 0.339
PGSC0003DMG400017484 Solanum tuberosum PGSC0003DMG400017484 I 0.326
PGSC0003DMG401004023 Solanum tuberosum PGSC0003DMG401004023 I 0.358
POPTR_0001s08990 Populus trichocarpa POPTR_0001s08990 I 0.338
HSF4 Populus trichocarpa POPTR_0007s11030 I 0.338
POPTR_0012s13430 Populus trichocarpa POPTR_0012s13430 I 0.329
PRUPE_ppa008441mg Prunus persica PRUPE_ppa008441mg I 0.325
PRUPE_ppa009180mg Prunus persica PRUPE_ppa009180mg I 0.328
Sb02g030490 Sorghum bicolor Sb02g030490 I 0.335
scaffold_600621.1 Arabidopsis lyrata scaffold_600621.1 I 0.354
AT-HSFB2B Arabidopsis lyrata scaffold_603575.1 I 0.339
scaffold_702441.1 Arabidopsis lyrata scaffold_702441.1 I 0.361
SELMODRAFT_126488 Selaginella moellendorffii SELMODRAFT_126488 I 0.320
SELMODRAFT_37324 Selaginella moellendorffii SELMODRAFT_37324 I 0.320
Si030094m.g Setaria italica Si030094m.g I 0.336
Solyc02g090820.2 Solanum lycopersicum Solyc02g090820.2 I 0.358
Solyc03g026020.2 Solanum lycopersicum Solyc03g026020.2 I 0.340
Solyc08g080540.2 Solanum lycopersicum Solyc08g080540.2 I 0.339
Solyc09g059520.2 Solanum lycopersicum Solyc09g059520.2 I 0.326
TCM_015119 Theobroma cacao TCM_015119 I 0.330
TCM_016198 Theobroma cacao TCM_016198 I 0.338
Traes_5BL_FCB1625F3 Triticum aestivum Traes_5BL_FCB1625F3 I 0.319
TRIUR3_31165 Triticum urartu TRIUR3_31165 I 0.321
AT-HSFB2B Vitis vinifera VIT_02s0025g04170 I 0.332
HSF4 Vitis vinifera VIT_07s0031g00670 I 0.319
AT-HSFB2A Vitis vinifera VIT_16s0100g00720 I 0.335
Ca_02416 Cicer arietinum Ca_02416 I 0.344
Ca_09277 Cicer arietinum Ca_09277 I 0.330
Cla000728 Citrullus lanatus Cla000728 I 0.329
Cla006297 Citrullus lanatus Cla006297 I 0.338
Cla011664 Citrullus lanatus Cla011664 I 0.339
Pm019357 Prunus mume Pm019357 I 0.328
Pm023788 Prunus mume Pm023788 I 0.325
30147.m014282 Ricinus communis 30147.m014282 I 0.330
30190.m011156 Ricinus communis 30190.m011156 I 0.331
cassava13765.valid.m1 Manihot esculenta cassava13765.valid.m1 I 0.339
cassava14764.m1 Manihot esculenta cassava14764.m1 I 0.322
cassava18944.valid.m1 Manihot esculenta cassava18944.valid.m1 I 0.323
cassava7014.valid.m1 Manihot esculenta cassava7014.valid.m1 I 0.339
Cucsa.102410 Cucumis sativus Cucsa.102410 I 0.327
Cucsa.107610 Cucumis sativus Cucsa.107610 I 0.339
Cucsa.206000 Cucumis sativus Cucsa.206000 I 0.332
mgf002110m Mimulus guttatus mgf002110m I 0.327
mgf014237m Mimulus guttatus mgf014237m I 0.343
Aquca_015_00059 Aquilegia coerulea Aquca_015_00059 I 0.322
Aquca_020_00446 Aquilegia coerulea Aquca_020_00446 I 0.321
Bostr.20129s0193 Boechera stricta Bostr.20129s0193 I 0.393
Bostr.25463s0156 Boechera stricta Bostr.25463s0156 I 0.336
Bostr.26959s0010 Boechera stricta Bostr.26959s0010 I 0.342
Bostr.30275s0365 Boechera stricta Bostr.30275s0365 I 0.320
Bostr.30275s0431 Boechera stricta Bostr.30275s0431 I 0.333
Bostr.7867s1570 Boechera stricta Bostr.7867s1570 I 0.324
Cagra.0096s0075 Capsella grandiflora Cagra.0096s0075 I 0.350
Cagra.1912s0005 Capsella grandiflora Cagra.1912s0005 I 0.338
Cagra.3262s0011 Capsella grandiflora Cagra.3262s0011 I 0.379
Cagra.3262s0012 Capsella grandiflora Cagra.3262s0012 I 0.332
Cagra.3262s0013 Capsella grandiflora Cagra.3262s0013 I 0.384
Cagra.3262s0014 Capsella grandiflora Cagra.3262s0014 I 0.383
Cagra.4306s0004 Capsella grandiflora Cagra.4306s0004 I 0.320
Cagra.4909s0039 Capsella grandiflora Cagra.4909s0039 I 0.335
Carubv10001204m.g Capsella rubella Carubv10001204m.g I 0.338
Carubv10004953m.g Capsella rubella Carubv10004953m.g I 0.320
Carubv10005408m.g Capsella rubella Carubv10005408m.g I 0.335
Carubv10006025m.g Capsella rubella Carubv10006025m.g I 0.379
Carubv10006026m.g Capsella rubella Carubv10006026m.g I 0.380
Carubv10021131m.g Capsella rubella Carubv10021131m.g I 0.350
Carubv10024599m.g Capsella rubella Carubv10024599m.g I 0.327
Ciclev10021287m.g Citrus clementina Ciclev10021287m.g I 0.334
Ciclev10026058m.g Citrus clementina Ciclev10026058m.g I 0.333
Eucgr.A02804 Eucalyptus grandis Eucgr.A02804 I 0.328
Eucgr.E00555 Eucalyptus grandis Eucgr.E00555 I 0.331
Eucgr.I00929 Eucalyptus grandis Eucgr.I00929 I 0.323
Eucgr.K00238 Eucalyptus grandis Eucgr.K00238 I 0.334
evm.TU.supercontig_107.31 Carica papaya evm.TU.supercontig_107.31 I 0.330
evm.TU.supercontig_55.150 Carica papaya evm.TU.supercontig_55.150 I 0.320
evm.TU.supercontig_74.64 Carica papaya evm.TU.supercontig_74.64 I 0.339
gene23802-v1.0-hybrid Fragaria vesca gene23802-v1.0-hybrid I 0.320
Gorai.003G160600 Gossypium raimondii Gorai.003G160600 I 0.337
Gorai.007G010900 Gossypium raimondii Gorai.007G010900 I 0.330
Gorai.007G053900 Gossypium raimondii Gorai.007G053900 I 0.337
Gorai.008G244400 Gossypium raimondii Gorai.008G244400 I 0.329
Gorai.011G105700 Gossypium raimondii Gorai.011G105700 I 0.340
Lus10008007.g Linum usitatissimum Lus10008007.g I 0.338
Lus10014994.g Linum usitatissimum Lus10014994.g I 0.328
Lus10024508.g Linum usitatissimum Lus10024508.g I 0.338
Lus10040911.g Linum usitatissimum Lus10040911.g I 0.326
MDP0000126826 Malus domestica MDP0000126826 I 0.326
MDP0000150429 Malus domestica MDP0000150429 I 0.322
MDP0000260377 Malus domestica MDP0000260377 I 0.322
Pavir.Ba01265 Panicum virgatum Pavir.Ba01265 I 0.322
Pavir.Fb02392 Panicum virgatum Pavir.Fb02392 I 0.335
Pavir.J03297 Panicum virgatum Pavir.J03297 I 0.336
SapurV1A.0507s0120 Salix purpurea SapurV1A.0507s0120 I 0.337
SapurV1A.0623s0030 Salix purpurea SapurV1A.0623s0030 I 0.319
SapurV1A.3173s0010 Salix purpurea SapurV1A.3173s0010 I 0.319
Thhalv10025090m.g Eutrema salsugineum Thhalv10025090m.g I 0.319
Thhalv10025906m.g Eutrema salsugineum Thhalv10025906m.g I 0.328
Thhalv10026540m.g Eutrema salsugineum Thhalv10026540m.g I 0.322
Thhalv10028026m.g Eutrema salsugineum Thhalv10028026m.g I 0.352
Thhalv10028027m.g Eutrema salsugineum Thhalv10028027m.g I 0.421
Thhalv10028744m.g Eutrema salsugineum Thhalv10028744m.g I 0.339
PK02428.1 Cannabis sativa PK02428.1 I 0.353
PK03562.1 Cannabis sativa PK03562.1 I 0.324
PK17549.1 Cannabis sativa PK17549.1 I 0.340
chr2.CM0304.780.nc Lotus japonicus chr2.CM0304.780.nc I 0.348
Bo4g139270 Brassica oleracea Bo4g139270 N 0.512
Bo4g139650 Brassica oleracea Bo4g139650 N 0.464
Bra025611 Brassica rapa Bra025611 N 0.475
Bra025632 Brassica rapa Bra025632 N 0.330
scaffold_702446.1 Arabidopsis lyrata scaffold_702446.1 N 0.365