AT-HSFA4A (Arabidopsis lyrata)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 fgenesh2_kg.7__2405__AT4G18880.1 T240578_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.585 1.000
HSFB4
M06936_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFB4_col_a 		0.458 0.678
HSFA1E
M06939_2.00 		Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_col_a 		0.449 0.678
HSFA1E
M06940_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a 		0.449 0.678
HSFA6B
M06941_2.00 		Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a 		0.448 0.724
HSFA6B
M06942_2.00 		Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_col 		0.448 0.724
HSFA1B
M06948_2.00 		Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF3_col_a 		0.434 0.678
HSFA1B
M06949_2.00 		Arabidopsis thaliana
TTCYRG
CYRGAA		 Dap-seq
OMalley et al.(2016)
HSF3_colamp_a 		0.434 0.678
HSFA6A
M06950_2.00 		Arabidopsis thaliana
GAASNTTCTAGAANNW
WNNTTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_col_a 		0.426 0.667
HSFA6A
M06951_2.00 		Arabidopsis thaliana
GAASNTTCTAGAA
TTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a 		0.426 0.667
HSFB2B
M06945_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_col_a 		0.410 0.632
HSFB2B
M06946_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_colamp_a 		0.410 0.632
HSFC1
M00868_2.00 		Arabidopsis thaliana
NDTCBNNN
NNNVGAHN		 PBM
Franco-Zorrilla et al.(2014)
HSFC1 		0.409 0.621
HSFC1
M06943_2.00 		Arabidopsis thaliana
GAASNTTCTAG
CTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFC1_col_a 		0.409 0.621
HSFC1
M06944_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAANVW
WBNTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a 		0.409 0.621
HSFB2A
M00869_2.00 		Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN		 PBM
Franco-Zorrilla et al.(2014)
HSFB2A 		0.401 0.609
HSFB2A
M06952_2.00 		Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF6_col_a 		0.401 0.609
HSFB3
M06937_2.00 		Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY		 Dap-seq
OMalley et al.(2016)
HSFB3_col_a 		0.380 0.598
HSFB3
M06938_2.00 		Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT		 Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a 		0.380 0.598
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.7__2405__AT4G18880.1 HSF 16 106

Links

Other HSF family TFs
Other Arabidopsis lyrata TFs

1524 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra025608 Brassica rapa Bra025608 I 0.320
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I
e_gw1.20.00.75.1 Ostreococcus tauri e_gw1.20.00.75.1 I 0.320
gw1.19.139.1 Ostreococcus RCC809 gw1.19.139.1 I 0.321
e_gw1.1.2474.1 Mucor circinelloides e_gw1.1.2474.1 I 0.322
EIN_230390 Entamoeba invadens EIN_230390 I 0.319
V565_116890 Rhizoctonia solani V565_116890 I 0.321
PGSC0003DMG400043234 Solanum tuberosum PGSC0003DMG400043234 I 0.320
maker-pag1_scaffold_219-snap-gene-0.16 Pythium aphanidermatum maker-pag1_scaffold_219-snap-gene-0.16 I 0.320
GLYMA19G37585 Glycine max GLYMA19G37585 I 0.321
GLYMA07G09510 Glycine max GLYMA07G09510 I 0.322
FIBRA_02011 Fibroporia radiculosa FIBRA_02011 I 0.320
ENSXMAG00000001905 Xiphophorus maculatus ENSXMAG00000001905 I 0.321
hsf1 Oryzias latipes ENSORLG00000001699 I 0.321
EMIHUDRAFT_470076 Emiliania huxleyi EMIHUDRAFT_470076 I 0.319
Bra025635 Brassica rapa Bra025635 I 0.322
GSPATT00026018001 Paramecium tetraurelia GSPATT00026018001 I 0.319
Bo7g061750 Brassica oleracea Bo7g061750 I 0.321
LjSGA_139647.1 Lotus japonicus LjSGA_139647.1 N
PK11227.1 Cannabis sativa PK11227.1 N
SapurV1A.0054s0370 Salix purpurea SapurV1A.0054s0370 N
MDP0000223109 Malus domestica MDP0000223109 N
Gorai.007G110000 Gossypium raimondii Gorai.007G110000 N
Gorai.004G151300 Gossypium raimondii Gorai.004G151300 N
evm.TU.supercontig_96.47 Carica papaya evm.TU.supercontig_96.47 N
28859.m000318 Ricinus communis 28859.m000318 N
Pm018346 Prunus mume Pm018346 N
VIT_15s0046g00240 Vitis vinifera VIT_15s0046g00240 N
VIT_15s0046g00230 Vitis vinifera VIT_15s0046g00230 N
PRUPE_ppa025888mg Prunus persica PRUPE_ppa025888mg N
POPTR_0014s16510 Populus trichocarpa POPTR_0014s16510 N
GLYMA19G44645 Glycine max GLYMA19G44645 N