CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bostr.26833s0037 *(Boechera stricta)* HSF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00447 (HSF_DNA-bind)	IPR000232	Bostr.26833s0037	T242991_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HSFB2A M00869_2.00	Arabidopsis thaliana	NNNNNTTCB	VGAANNNNN	PBM Franco-Zorrilla et al.(2014) HSFB2A	0.554	0.966
HSFB2A M06952_2.00	Arabidopsis thaliana	GAANNTTCYAGA	TCTRGAANNTTC	Dap-seq OMalley et al.(2016) HSF6_col_a	0.554	0.966
HSFB2B M06945_2.00	Arabidopsis thaliana	RGAANNTTCTAGAA	TTCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSF7_col_a	0.457	0.828
HSFB2B M06946_2.00	Arabidopsis thaliana	RGAANNTTCTAGAA	TTCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSF7_colamp_a	0.457	0.828
HSFA6A M06950_2.00	Arabidopsis thaliana	GAASNTTCTAGAANNW	WNNTTCTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFA6A_col_a	0.444	0.655
HSFA6A M06951_2.00	Arabidopsis thaliana	GAASNTTCTAGAA	TTCTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFA6A_colamp_a	0.444	0.655
HSFB4 M06936_2.00	Arabidopsis thaliana	RGAASNTTCTAGAAN	NTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFB4_col_a	0.425	0.713
HSFA6B M06941_2.00	Arabidopsis thaliana	RGAASNTTCTAGA	TCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFA6B_colamp_a	0.415	0.690
HSFA6B M06942_2.00	Arabidopsis thaliana	RGAABNTTCTRGAAN	NTTCYAGAANVTTCY	Dap-seq OMalley et al.(2016) HSFA6B_col	0.415	0.690
HSFA1B M06948_2.00	Arabidopsis thaliana	GAANNTTCTAGA	TCTAGAANNTTC	Dap-seq OMalley et al.(2016) HSF3_col_a	0.408	0.655
HSFA1B M06949_2.00	Arabidopsis thaliana	TTCYRG	CYRGAA	Dap-seq OMalley et al.(2016) HSF3_colamp_a	0.408	0.655
HSFB3 M06937_2.00	Arabidopsis thaliana	RRAANMWTCTAGAAV	BTTCTAGAWKNTTYY	Dap-seq OMalley et al.(2016) HSFB3_col_a	0.405	0.644
HSFB3 M06938_2.00	Arabidopsis thaliana	AABSTTCTAGAAN	NTTCTAGAASVTT	Dap-seq OMalley et al.(2016) HSFB3_colamp_a	0.405	0.644
HSFA1E M06939_2.00	Arabidopsis thaliana	RGAANNTTCTAGA	TCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSFA1E_col_a	0.392	0.655
HSFA1E M06940_2.00	Arabidopsis thaliana	RGAASNTTCTAGAAN	NTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFA1E_colamp_a	0.392	0.655
HSFC1 M00868_2.00	Arabidopsis thaliana	NDTCBNNN	NNNVGAHN	PBM Franco-Zorrilla et al.(2014) HSFC1	0.389	0.609
HSFC1 M06943_2.00	Arabidopsis thaliana	GAASNTTCTAG	CTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFC1_col_a	0.389	0.609
HSFC1 M06944_2.00	Arabidopsis thaliana	RGAASNTTCTAGAANVW	WBNTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFC1_colamp_a	0.389	0.609
HSFA4A M06947_2.00	Arabidopsis thaliana	NNNRGAABBTTCTAGAANN	NNTTCTAGAAVVTTCYNNN	Dap-seq OMalley et al.(2016) HSF21_col_a	0.381	0.609
HSF2 M03324_2.00	Homo sapiens	GAANVTTCTAGAA	TTCTAGAABNTTC	SELEX Jolma et al.(2013) HSF2_1	0.321	0.540
HSF2 M02744_2.00	Homo sapiens	GAABGTTCTRGA	TCYAGAACVTTC	SELEX Jolma et al.(2010) HSF2_dimertrimer	0.321	0.540
HSF2 M05505_2.00	Homo sapiens	VGAABVTTCBVGAWN	NWTCBVGAABVTTCB	SELEX Yin et al.(2017) HSF2_eDBD_HT-SELEX	0.321	0.540
HSF2 M05507_2.00	Homo sapiens	VGAANNTTCBVGAAN	NTTCBVGAANNTTCB	SELEX Yin et al.(2017) HSF2_FL_HT-SELEX	0.321	0.540
HSF2 M09229_2.00	Homo sapiens	VGAABVTTCKVGAN	NTCBMGAABVTTCB	Misc Kulakovskiy et al.(2013) HSF2_HUMAN.H11MO.0.A	0.321	0.540
Hsf2 M09231_2.00	Mus musculus	VGAABVTTCKVGAN	NTCBMGAABVTTCB	Misc Kulakovskiy et al.(2013) HSF2_MOUSE.H11MO.0.A	0.321	0.540
HSF2 M10859_2.00	Homo sapiens	VGAANNWTCB	VGAWNNTTCB	Transfac Matys et al.(2006) V$HSF2_01	0.321	0.540
HSF2 M10860_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HSF2_02	0.321	0.540
HSF2 M10861_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HSF2_Q6	0.321	0.540
HSF2 M05506_2.00	Homo sapiens	RGAABVTTCYRGAWN	NWTCYRGAABVTTCY	SELEX Yin et al.(2017) HSF2_eDBD_Methyl-HT-SELEX	0.321	0.540
HSF2 M05508_2.00	Homo sapiens	RGAABVTTCYRGAWN	NWTCYRGAABVTTCY	SELEX Yin et al.(2017) HSF2_FL_Methyl-HT-SELEX	0.321	0.540
For this family, TFs with SR scores > 0.318* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bostr.26833s0037.1.p	HSF	24	114	FLTKTYNLVEDSSINDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDYFKRGEKRLLREIQRRK

Links
Other HSF family TFs
Other *Boechera stricta* TFs

1480 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BGIOSGA028419	Oryza indica	BGIOSGA028419	N
LPERR08G08390	Leersia perrieri	LPERR08G08390	N
OLONG_015028	Oryza longistaminata	OLONG_015028	N
ONIVA04G01430	Oryza nivara	ONIVA04G01430	N
OPUNC08G17930	Oryza punctata	OPUNC08G17930	N
ORUFI08G11050	Oryza rufipogon	ORUFI08G11050	N

Bostr.26833s0037 (Boechera stricta) HSF

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1480 Related TFs

Bostr.26833s0037 **(Boechera stricta)
HSF**