IRF6 (Gallus gallus)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSGALG00000001405 T244098_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF6
M02253_2.00		 Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.990 0.990
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.962 0.962
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		0.933 0.933
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		0.933 0.933
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		0.933 0.933
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		0.933 0.933
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		0.933 0.933
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.771 0.771
Irf5
M00177_2.00 		Mus musculus
NNNHGADASH
DSTHTCDNNN		 PBM
Badis et al.(2009)
Irf5_3874 		0.724 0.724
IRF5
M03332_2.00 		Homo sapiens
YCGAAACCGAAMCY
RGKTTCGGTTTCGR		 SELEX
Jolma et al.(2013)
IRF5_1 		0.724 0.724
IRF5
M03333_2.00 		Homo sapiens
HACCGAAACYV
BRGTTTCGGTD		 SELEX
Jolma et al.(2013)
IRF5_2 		0.724 0.724
IRF5
M05535_2.00 		Homo sapiens
NCGAAACCGAWACH
DGTWTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_eDBD_HT-SELEX 		0.724 0.724
IRF5
M05537_2.00 		Homo sapiens
NCGAAACCGAAACY
RGTTTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_FL_HT-SELEX 		0.724 0.724
IRF5
M10884_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF5_Q3 		0.724 0.724
IRF5
M05536_2.00 		Homo sapiens
NYGAWACYGAWACH
DGTWTCRGTWTCRN		 SELEX
Yin et al.(2017)
IRF5_eDBD_Methyl-HT-SELEX 		0.724 0.724
IRF5
M05538_2.00 		Homo sapiens
NYGAAACCGAWACY
RGTWTCGGTTTCRN		 SELEX
Yin et al.(2017)
IRF5_FL_Methyl-HT-SELEX 		0.724 0.724
IRF5
M02256_2.00 		Oryctolagus cuniculus
NHCGAAACYN
NRGTTTCGDN		 PBM
Weirauch et al.(2014)
pTH9272 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02253_2.00 IRF 9 114

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000039479 IRF 19 124

Links

Other IRF family TFs
Other Gallus gallus TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OESDEN_21968 Oesophagostomum dentatum OESDEN_21968 N
L889_g2315 Steinernema feltiae L889_g2315 N
L892_g26146 Steinernema scapterisci L892_g26146 N
L893_g25152 Steinernema glaseri L893_g25152 N
L898_g34435 Steinernema monticolum L898_g34435 N
maker-nMf.1.1.scaf23008-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf23008-snap-gene-0.4 N
MhA1_Contig3017.frz3.gene1 Meloidogyne hapla MhA1_Contig3017.frz3.gene1 N
nAv.1.0.1.g02967 Acanthocheilonema viteae nAv.1.0.1.g02967 N
NBR_0000074101 Nippostrongylus brasiliensis NBR_0000074101 N
nDi.2.2.2.g01958 Dirofilaria immitis nDi.2.2.2.g01958 N
nLs.2.1.2.g00565 Litomosoides sigmodontis nLs.2.1.2.g00565 N
nOo.2.0.1.g03319 Onchocerca ochengi nOo.2.0.1.g03319 N
OESDEN_08787 Oesophagostomum dentatum OESDEN_08787 N
L596_g19795 Steinernema carpocapsae L596_g19795 N
OFLC_0001268901 Onchocerca flexuosa OFLC_0001268901 N
PTRK_0001365600 Parastrongyloides trichosuri PTRK_0001365600 N
RSKR_0001024700 Rhabditophanes kr3021 RSKR_0001024700 N
SMUV_0000066701 Syphacia muris SMUV_0000066701 N
SPAL_0000486600 Strongyloides papillosus SPAL_0000486600 N
SSTP_0000566900 Strongyloides stercoralis SSTP_0000566900 N
SVE_0169500 Strongyloides venezuelensis SVE_0169500 N
SVUK_0000275901 Strongylus vulgaris SVUK_0000275901 N
TCLT_0000269001 Thelazia callipaeda TCLT_0000269001 N
TCNE_0000831801 Toxocara canis TCNE_0000831801 N
TELCIR_08200 Teladorsagia circumcincta TELCIR_08200 N
ANCDUO_15741 Ancylostoma duodenale ANCDUO_15741 N
CBG22107 Caenorhabditis briggsae CBG22107 N
CBN30232 Caenorhabditis brenneri CBN30232 N
CBN30270 Caenorhabditis brenneri CBN30270 N
CJA08191 Caenorhabditis japonica CJA08191 N
CRE03949 Caenorhabditis remanei CRE03949 N
LOAG_08456 Loa loa LOAG_08456 N
Ppa-hmbx-1 Pristionchus pacificus PPA23312 N
hmbx-1 Caenorhabditis elegans WBGene00018786 N
WBGene00237307 Onchocerca volvulus WBGene00237307 N
ALUE_0000619901 Ascaris lumbricoides ALUE_0000619901 N
ANCCAN_05450 Ancylostoma caninum ANCCAN_05450 N
WUBG_01272 Wuchereria bancrofti WUBG_01272 N
ASU_13766 Ascaris suum ASU_13766 N
BTMF_0000486301 Brugia timori BTMF_0000486301 N
BXY_0672000 Bursaphelenchus xylophilus BXY_0672000 N
DICVIV_09346 Dictyocaulus viviparus DICVIV_09346 N
DME_0000931601 Dracunculus medinensis DME_0000931601 N
EEL_0000684201 Elaeophora elaphi EEL_0000684201 N
EVEC_0001364401 Enterobius vermicularis EVEC_0001364401 N
GPLIN_000440300 Globodera pallida GPLIN_000440300 N
GPUH_0001663001 Gongylonema pulchrum GPUH_0001663001 N
Hba_11200 Heterorhabditis bacteriophora Hba_11200 N
HPBE_0002612401 Heligmosomoides bakeri HPBE_0002612401 N