ENSLACG00000005750 (Latimeria chalumnae)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSLACG00000005750 T244131_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.790 0.790
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.752 0.752
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.771 0.771
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.762 0.762
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		0.724 0.724
Irf5
M00177_2.00 		Mus musculus
NNNHGADASH
DSTHTCDNNN		 PBM
Badis et al.(2009)
Irf5_3874 		0.724 0.724
IRF5
M03332_2.00 		Homo sapiens
YCGAAACCGAAMCY
RGKTTCGGTTTCGR		 SELEX
Jolma et al.(2013)
IRF5_1 		0.724 0.724
IRF5
M03333_2.00 		Homo sapiens
HACCGAAACYV
BRGTTTCGGTD		 SELEX
Jolma et al.(2013)
IRF5_2 		0.724 0.724
IRF5
M05535_2.00 		Homo sapiens
NCGAAACCGAWACH
DGTWTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_eDBD_HT-SELEX 		0.724 0.724
IRF5
M05537_2.00 		Homo sapiens
NCGAAACCGAAACY
RGTTTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_FL_HT-SELEX 		0.724 0.724
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		0.743 0.743
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		0.743 0.743
IRF5
M10884_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF5_Q3 		0.724 0.724
IRF5
M05536_2.00 		Homo sapiens
NYGAWACYGAWACH
DGTWTCRGTWTCRN		 SELEX
Yin et al.(2017)
IRF5_eDBD_Methyl-HT-SELEX 		0.724 0.724
IRF5
M05538_2.00 		Homo sapiens
NYGAAACCGAWACY
RGTWTCGGTTTCRN		 SELEX
Yin et al.(2017)
IRF5_FL_Methyl-HT-SELEX 		0.724 0.724
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		0.724 0.724
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		0.724 0.724
IRF5
M02256_2.00 		Oryctolagus cuniculus
NHCGAAACYN
NRGTTTCGDN		 PBM
Weirauch et al.(2014)
pTH9272 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000006485 IRF 16 121
ENSLACP00000023635 IRF 9 114

Links

Other IRF family TFs
Other Latimeria chalumnae TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sakowv30037004m.g Saccoglossus kowalevskii Sakowv30037004m.g I
Sakowv30037007m.g Saccoglossus kowalevskii Sakowv30037007m.g I
Sakowv30037050m.g Saccoglossus kowalevskii Sakowv30037050m.g I
Sakowv30037045m.g Saccoglossus kowalevskii Sakowv30037045m.g I
Sakowv30037039m.g Saccoglossus kowalevskii Sakowv30037039m.g I
Sakowv30037015m.g Saccoglossus kowalevskii Sakowv30037015m.g I
Sakowv30037033m.g Saccoglossus kowalevskii Sakowv30037033m.g N
Sakowv30037006m.g Saccoglossus kowalevskii Sakowv30037006m.g N
Sakowv30037008m.g Saccoglossus kowalevskii Sakowv30037008m.g N
Sakowv30037009m.g Saccoglossus kowalevskii Sakowv30037009m.g N
Sakowv30037024m.g Saccoglossus kowalevskii Sakowv30037024m.g N
Sakowv30037025m.g Saccoglossus kowalevskii Sakowv30037025m.g N
Sakowv30037005m.g Saccoglossus kowalevskii Sakowv30037005m.g N
Sakowv30037034m.g Saccoglossus kowalevskii Sakowv30037034m.g N
Sakowv30037046m.g Saccoglossus kowalevskii Sakowv30037046m.g N
Sakowv30037051m.g Saccoglossus kowalevskii Sakowv30037051m.g N
Sakowv30037052m.g Saccoglossus kowalevskii Sakowv30037052m.g N
Sakowv30037056m.g Saccoglossus kowalevskii Sakowv30037056m.g N
Sakowv30034954m.g Saccoglossus kowalevskii Sakowv30034954m.g N
Sakowv30037003m.g Saccoglossus kowalevskii Sakowv30037003m.g N
Sakowv30037002m.g Saccoglossus kowalevskii Sakowv30037002m.g N
Sakowv30037000m.g Saccoglossus kowalevskii Sakowv30037000m.g N
Sakowv30036999m.g Saccoglossus kowalevskii Sakowv30036999m.g N
Sakowv30036997m.g Saccoglossus kowalevskii Sakowv30036997m.g N
Sakowv30036996m.g Saccoglossus kowalevskii Sakowv30036996m.g N
Sakowv30036995m.g Saccoglossus kowalevskii Sakowv30036995m.g N
Sakowv30036994m.g Saccoglossus kowalevskii Sakowv30036994m.g N
Sakowv30034965m.g Saccoglossus kowalevskii Sakowv30034965m.g N
Sakowv30034963m.g Saccoglossus kowalevskii Sakowv30034963m.g N
Sakowv30034960m.g Saccoglossus kowalevskii Sakowv30034960m.g N
Sakowv30034959m.g Saccoglossus kowalevskii Sakowv30034959m.g N
Sakowv30034957m.g Saccoglossus kowalevskii Sakowv30034957m.g N
Sakowv30034956m.g Saccoglossus kowalevskii Sakowv30034956m.g N
Sakowv30034955m.g Saccoglossus kowalevskii Sakowv30034955m.g N