IRF6 (Meleagris gallopavo)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSMGAG00000004431 T244168_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF6
M02254_2.00		 Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.990 0.990
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.971 0.971
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		0.943 0.943
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		0.943 0.943
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		0.943 0.943
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		0.943 0.943
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		0.943 0.943
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.781 0.781
Irf5
M00177_2.00 		Mus musculus
NNNHGADASH
DSTHTCDNNN		 PBM
Badis et al.(2009)
Irf5_3874 		0.724 0.724
IRF5
M03332_2.00 		Homo sapiens
YCGAAACCGAAMCY
RGKTTCGGTTTCGR		 SELEX
Jolma et al.(2013)
IRF5_1 		0.724 0.724
IRF5
M03333_2.00 		Homo sapiens
HACCGAAACYV
BRGTTTCGGTD		 SELEX
Jolma et al.(2013)
IRF5_2 		0.724 0.724
IRF5
M05535_2.00 		Homo sapiens
NCGAAACCGAWACH
DGTWTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_eDBD_HT-SELEX 		0.724 0.724
IRF5
M05537_2.00 		Homo sapiens
NCGAAACCGAAACY
RGTTTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_FL_HT-SELEX 		0.724 0.724
IRF5
M10884_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF5_Q3 		0.724 0.724
IRF5
M05536_2.00 		Homo sapiens
NYGAWACYGAWACH
DGTWTCRGTWTCRN		 SELEX
Yin et al.(2017)
IRF5_eDBD_Methyl-HT-SELEX 		0.724 0.724
IRF5
M05538_2.00 		Homo sapiens
NYGAAACCGAWACY
RGTWTCGGTTTCRN		 SELEX
Yin et al.(2017)
IRF5_FL_Methyl-HT-SELEX 		0.724 0.724
IRF5
M02256_2.00 		Oryctolagus cuniculus
NHCGAAACYN
NRGTTTCGDN		 PBM
Weirauch et al.(2014)
pTH9272 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02254_2.00 IRF 9 114

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMGAP00000004262 IRF 9 114

Links

Other IRF family TFs
Other Meleagris gallopavo TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
hlfa Tetraodon nigroviridis ENSTNIG00000011274 I
ENSTRUG00000003893 Takifugu rubripes ENSTRUG00000003893 I
XP_002937859 Xenopus tropicalis XP_002937859 I
tef.S Xenopus laevis XB-GENE-962737 I
tef Xenopus tropicalis XB-GENE-962732 I
hlf Xenopus tropicalis XB-GENE-955698 I
dbp.L Xenopus laevis XB-GENE-6256610 I
dbp Xenopus tropicalis XB-GENE-5995286 I
Pvit_12136 Pogona vitticeps Pvit_12136 I
Ogr12886 Ophisaurus gracilis Ogr12886 I
Alligator_sinensis_CCG018001.1 Alligator sinensis Alligator_sinensis_CCG018001.1 I
ENSXMAG00000014158 Xiphophorus maculatus ENSXMAG00000014158 I
ENSXMAG00000012054 Xiphophorus maculatus ENSXMAG00000012054 I
ENSTRUG00000007098 Takifugu rubripes ENSTRUG00000007098 I
hlfa Takifugu rubripes ENSTRUG00000003731 I
DBP Anolis carolinensis ENSACAG00000015667 I
ENSTNIG00000008098 Tetraodon nigroviridis ENSTNIG00000008098 I
ENSTNIG00000004400 Tetraodon nigroviridis ENSTNIG00000004400 I
ENSPFOG00000010189 Poecilia formosa ENSPFOG00000010189 I
ENSPFOG00000007430 Poecilia formosa ENSPFOG00000007430 I
ENSORLG00000011412 Oryzias latipes ENSORLG00000011412 I
ENSONIG00000012778 Oreochromis niloticus ENSONIG00000012778 I
ENSONIG00000007041 Oreochromis niloticus ENSONIG00000007041 I
ENSLACG00000006062 Latimeria chalumnae ENSLACG00000006062 I
ENSGACG00000010676 Gasterosteus aculeatus ENSGACG00000010676 I
dbpa Danio rerio ENSDARG00000063014 I
hlfb Danio rerio ENSDARG00000061011 I
ENSAMXG00000016053 Astyanax mexicanus ENSAMXG00000016053 I
ENSAMXG00000009417 Astyanax mexicanus ENSAMXG00000009417 I
HMEL014752 Heliconius melpomene HMEL014752 N
dbpb Danio rerio ENSDARG00000057652 N