Afo_R001981 (Aptenodytes forsteri)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00605 (IRF) IPR001346 Afo_R001981 T244499_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.990 0.990
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.981 0.981
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.962 0.962
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		0.933 0.933
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		0.933 0.933
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		0.933 0.933
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		0.933 0.933
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		0.933 0.933
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.781 0.781
Irf5
M00177_2.00 		Mus musculus
NNNHGADASH
DSTHTCDNNN		 PBM
Badis et al.(2009)
Irf5_3874 		0.724 0.724
IRF5
M03332_2.00 		Homo sapiens
YCGAAACCGAAMCY
RGKTTCGGTTTCGR		 SELEX
Jolma et al.(2013)
IRF5_1 		0.724 0.724
IRF5
M03333_2.00 		Homo sapiens
HACCGAAACYV
BRGTTTCGGTD		 SELEX
Jolma et al.(2013)
IRF5_2 		0.724 0.724
IRF5
M05535_2.00 		Homo sapiens
NCGAAACCGAWACH
DGTWTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_eDBD_HT-SELEX 		0.724 0.724
IRF5
M05537_2.00 		Homo sapiens
NCGAAACCGAAACY
RGTTTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_FL_HT-SELEX 		0.724 0.724
IRF5
M10884_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF5_Q3 		0.724 0.724
IRF5
M05536_2.00 		Homo sapiens
NYGAWACYGAWACH
DGTWTCRGTWTCRN		 SELEX
Yin et al.(2017)
IRF5_eDBD_Methyl-HT-SELEX 		0.724 0.724
IRF5
M05538_2.00 		Homo sapiens
NYGAAACCGAWACY
RGTWTCGGTTTCRN		 SELEX
Yin et al.(2017)
IRF5_FL_Methyl-HT-SELEX 		0.724 0.724
IRF5
M02256_2.00 		Oryctolagus cuniculus
NHCGAAACYN
NRGTTTCGDN		 PBM
Weirauch et al.(2014)
pTH9272 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R001981 IRF 9 114

Links

Other IRF family TFs
Other Aptenodytes forsteri TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VDBG_07957 Verticillium albo atrum VDBG_07957 I
VDBG_07957 Verticillium alfalfae VDBG_07957 I
VDAG_05527 Verticillium dahliae VDAG_05527 I
F503_08290 Ophiostoma piceae uamh F503_08290 I
FFUJ_04361 Fusarium fujikuroi FFUJ_04361 I
FOXG_06191 Fusarium oxysporum FOXG_06191 I
FVEG_04045 Fusarium verticillioides FVEG_04045 I
NechaG32416 Fusarium solani NechaG32416 N
MGG_02493 Magnaporthe oryzae MGG_02493 N
PV09_04501 Verruconis gallopava PV09_04501 N
S40285_04138 Stachybotrys chlorohalonata S40285_04138 N
S40288_07815 Stachybotrys chartarum S40288_07815 N
SAPIO_CDS8133 Scedosporium apiospermum SAPIO_CDS8133 N
SBOR_9471 Sclerotinia borealis SBOR_9471 N
SS1G_02435 Sclerotinia sclerotiorum SS1G_02435 N
TRIATDRAFT_212147 Trichoderma atroviride TRIATDRAFT_212147 N
TRIREDRAFT_57100 Trichoderma reesei TRIREDRAFT_57100 N
TRIVIDRAFT_194623 Trichoderma virens TRIVIDRAFT_194623 N
UCRNP2_9340 Neofusicoccum parvum UCRNP2_9340 N
UCRPA7_784 Togninia minima UCRPA7_784 N
UV8b_863 Ustilaginoidea virens UV8b_863 N
V499_03352 Pseudogymnoascus pannorum V499_03352 N
VHEMI06672 Torrubiella hemipterigena VHEMI06672 N
W97_07908 Coniosporium apollinis W97_07908 N
X797_000454 Metarhizium robertsii X797_000454 N
e_gw1.18.1597.1 Nectria haematococca e_gw1.18.1597.1 N
FGRRES_09495 Fusarium graminearum FGRRES_09495 N
BBA_07446 Beauveria bassiana BBA_07446 N
Bcin13g04140 Botrytis cinerea Bcin13g04140 N
CCM_05113 Cordyceps militaris CCM_05113 N
CFIO01_10250 Colletotrichum fioriniae CFIO01_10250 N
CGGC5_3246 Colletotrichum gloeosporioides CGGC5_3246 N
CH063_06226 Colletotrichum higginsianum CH063_06226 N
Cob_01104 Colletotrichum orbiculare Cob_01104 N
CPUR_08686 Claviceps purpurea CPUR_08686 N
CSUB01_00584 Colletotrichum sublineola CSUB01_00584 N
MPH_11315 Macrophomina phaseolina MPH_11315 N
FPSE_10753 Fusarium pseudograminearum FPSE_10753 N
GLRG_05436 Colletotrichum graminicola GLRG_05436 N
GMDG_01999 Pseudogymnoascus destructans GMDG_01999 N
MAC_02687 Metarhizium acridum MAC_02687 N
MAJ_00221 Metarhizium majus MAJ_00221 N
MAM_02840 Metarhizium album MAM_02840 N
MANI_018633 Metarhizium anisopliae MANI_018633 N
MBR_02416 Metarhizium brunneum MBR_02416 N
MGU_00595 Metarhizium guizhouense MGU_00595 N