cassava11118.m1 (Manihot esculenta)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 cassava11118.m1 T246433_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD23
M06964_2.00 		Arabidopsis thaliana
NGCGNDRAWNNCGCN
NGCGNNWTYHNCGCN		 Dap-seq
OMalley et al.(2016)
LBD23_col_a 		0.737 0.737
LBD23
M06965_2.00 		Arabidopsis thaliana
DGCGDDRRWNNCGCN
NGCGNNWYYHHCGCH		 Dap-seq
OMalley et al.(2016)
LBD23_colamp_a 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava11118.m1 LOB 5 103

Links

Other LOB family TFs
Other Manihot esculenta TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD23 Arabidopsis thaliana AT3G26620 D 0.737
LBD24 Arabidopsis thaliana AT3G26660 I 0.737
Bostr.0556s0333 Boechera stricta Bostr.0556s0333 I 0.747
Cagra.3598s0013 Capsella grandiflora Cagra.3598s0013 I 0.727
Carubv10018979m.g Capsella rubella Carubv10018979m.g I 0.727
cassava35977.valid.m1 Manihot esculenta cassava35977.valid.m1 I 0.828
Eucgr.A02814 Eucalyptus grandis Eucgr.A02814 I 0.798
evm.TU.supercontig_1.335 Carica papaya evm.TU.supercontig_1.335 I 0.818
evm.TU.supercontig_1.339 Carica papaya evm.TU.supercontig_1.339 I 0.828
scaffold_500562.1 Arabidopsis lyrata scaffold_500562.1 I 0.737
POPTR_0012s13910 Populus trichocarpa POPTR_0012s13910 I 0.848
SapurV1A.0400s0200 Salix purpurea SapurV1A.0400s0200 I 0.838
Bo3g065910 Brassica oleracea Bo3g065910 I 0.707
Gorai.009G123600 Gossypium raimondii Gorai.009G123600 N 0.747
Gorai.008G280400 Gossypium raimondii Gorai.008G280400 N 0.737
gene26806-v1.0-hybrid Fragaria vesca gene26806-v1.0-hybrid N 0.707
MDP0000288452 Malus domestica MDP0000288452 N 0.714
SapurV1A.0068s0590 Salix purpurea SapurV1A.0068s0590 N 0.808
chr3.CM0135.10.nc Lotus japonicus chr3.CM0135.10.nc N 0.707
LjT39A22.30.nd Lotus japonicus LjT39A22.30.nd N 0.707
mgf017470m Mimulus guttatus mgf017470m N 0.727
Cucsa.250990 Cucumis sativus Cucsa.250990 N 0.737
Cucsa.161230 Cucumis sativus Cucsa.161230 N 0.707
29613.m000372 Ricinus communis 29613.m000372 N 0.869
Pm016263 Prunus mume Pm016263 N 0.778
Ca_16884 Cicer arietinum Ca_16884 N 0.778
VIT_16s0100g00440 Vitis vinifera VIT_16s0100g00440 N 0.758
TCM_035123 Theobroma cacao TCM_035123 N 0.768
Solyc01g109240.1 Solanum lycopersicum Solyc01g109240.1 N 0.707
PRUPE_ppa024504mg Prunus persica PRUPE_ppa024504mg N 0.737
POPTR_0015s13870 Populus trichocarpa POPTR_0015s13870 N 0.828
MTR_7g028905 Medicago truncatula MTR_7g028905 N 0.727
MTR_5g093010 Medicago truncatula MTR_5g093010 N 0.758
GLYMA14G02440 Glycine max GLYMA14G02440 N 0.727