Cla023054 (Citrullus lanatus)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cla023054 T250140_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.970 0.880
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.968 0.760
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.964 0.587
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.960 0.573
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.960 0.573
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.960 0.573
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.958 0.667
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.958 0.667
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.958 0.667
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.954 0.733
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.950 0.760
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.947 0.680
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.940 0.507
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.921 0.693
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.910 0.520
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.876 0.400
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla023054 MADF 81 158

Links

Other MADF family TFs
Other Citrullus lanatus TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
UM04928 Ustilago maydis UM04928 D
AMAG_10906 Allomyces macrogynus AMAG_10906 I
AMAG_11503 Allomyces macrogynus AMAG_11503 I
EBI_21706 Enterocytozoon bieneusi EBI_21706 I
ENSOCUG00000029369 Oryctolagus cuniculus ENSOCUG00000029369 I
ENSOPRG00000003187 Ochotona princeps ENSOPRG00000003187 I
GLOINDRAFT_4254 Rhizophagus irregularis GLOINDRAFT_4254 I
KAFR_0A06770 Kazachstania africana KAFR_0A06770 I
KUCA_T00003449001 Kuraishia capsulata KUCA_T00003449001 I
MPER_07921 Moniliophthora perniciosa MPER_07921 I
PFL1_02807 Pseudozyma flocculosa PFL1_02807 I
PHSY_003535 Pseudozyma hubeiensis PHSY_003535 I
sr15806 Sporisorium reilianum sr15806 I
UHOR_07039 Ustilago hordei UHOR_07039 I
AMEM010415 Anopheles merus AMEM010415 I
K437DRAFT_95032 Tilletiaria anomala K437DRAFT_95032 N