Cla023054 (Citrullus lanatus)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cla023054 T250140_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.970 0.880
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.968 0.760
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.964 0.587
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.960 0.573
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.960 0.573
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.960 0.573
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.958 0.667
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.958 0.667
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.958 0.667
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.954 0.733
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.950 0.760
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.947 0.680
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.940 0.507
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.921 0.693
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.910 0.520
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.876 0.400
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla023054 MADF 81 158

Links

Other MADF family TFs
Other Citrullus lanatus TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.970
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.970
Pm006885 Prunus mume Pm006885 I 0.968
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.968
MDP0000164819 Malus domestica MDP0000164819 D 0.968
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.964
Bra026903 Brassica rapa Bra026903 I 0.961
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.961
GT-1 Arabidopsis thaliana AT1G13450 D 0.960
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.960
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.960
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.960
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.959
GT-4 Arabidopsis thaliana AT3G25990 D 0.958
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.957
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.954
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.954
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.954
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.954
Bo5g017510 Brassica oleracea Bo5g017510 I 0.952
Bra019721 Brassica rapa Bra019721 I 0.952
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.950
Ca_11315 Cicer arietinum Ca_11315 I 0.950
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.950
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.950
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.950
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.948
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.947
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.944
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.943
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.943
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.943
OS04G0486400 Oryza sativa OS04G0486400 D 0.940
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.940
Bo8g107400 Brassica oleracea Bo8g107400 I 0.939
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.939
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.938
Si036121m.g Setaria italica Si036121m.g I 0.938
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.938
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.936
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.934
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.934
Si010147m.g Setaria italica Si010147m.g I 0.933
TCM_010751 Theobroma cacao TCM_010751 I 0.933
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.933
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.932
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.930
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.927
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.926
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.925
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.925
OB04G23970 Oryza brachyantha OB04G23970 I 0.924
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.924
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.923
29929.m004704 Ricinus communis 29929.m004704 D 0.921
Bo2g138840 Brassica oleracea Bo2g138840 I 0.920
Bra036354 Brassica rapa Bra036354 I 0.918
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.914
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.913
PK20543.1 Cannabis sativa PK20543.1 D 0.910
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.908
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.908
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.907
mgf016368m Mimulus guttatus mgf016368m I 0.892
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.886
Pm016214 Prunus mume Pm016214 I 0.886
MDP0000275412 Malus domestica MDP0000275412 I 0.881
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.876