Pavir.Ga01561 (Panicum virgatum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Pavir.Ga01561 T250816_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.955 0.859
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.923 0.606
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.917 0.634
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.917 0.634
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.917 0.634
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.909 0.549
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.909 0.549
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.907 0.648
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.900 0.662
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.900 0.648
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.897 0.662
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.897 0.577
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.887 0.549
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.887 0.549
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.887 0.549
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.855 0.479
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ga01561.1.p MADF 62 138
Pavir.Ga01561.2.p MADF 62 138
Pavir.Ga01561.3.p MADF 62 138

Links

Other MADF family TFs
Other Panicum virgatum TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si036121m.g Setaria italica Si036121m.g I 0.955
OS04G0486400 Oryza sativa OS04G0486400 D 0.955
Si010147m.g Setaria italica Si010147m.g I 0.951
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.950
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.950
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.949
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.934
mgf016368m Mimulus guttatus mgf016368m I 0.929
OB04G23970 Oryza brachyantha OB04G23970 I 0.926
TCM_010751 Theobroma cacao TCM_010751 I 0.925
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.925
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.925
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.924
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.923
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.918
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.918
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.917
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.917
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.917
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.917
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.917
Bo8g107400 Brassica oleracea Bo8g107400 I 0.917
GT-1 Arabidopsis thaliana AT1G13450 D 0.917
Bra026903 Brassica rapa Bra026903 I 0.917
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.916
Bo5g017510 Brassica oleracea Bo5g017510 I 0.915
Bra019721 Brassica rapa Bra019721 I 0.915
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.911
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.909
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.909
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.909
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.909
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.908
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.907
Cla023054 Citrullus lanatus Cla023054 I 0.907
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.907
PK20543.1 Cannabis sativa PK20543.1 D 0.907
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.904
MDP0000164819 Malus domestica MDP0000164819 D 0.900
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.900
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.900
Pm006885 Prunus mume Pm006885 I 0.900
Ca_11315 Cicer arietinum Ca_11315 I 0.900
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.900
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.900
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.900
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.899
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.899
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.899
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.898
29929.m004704 Ricinus communis 29929.m004704 D 0.897
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.897
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.897
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.892
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.890
GT-4 Arabidopsis thaliana AT3G25990 D 0.887
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.887
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.887
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.887
Bo2g138840 Brassica oleracea Bo2g138840 I 0.887
Bra036354 Brassica rapa Bra036354 I 0.887
MDP0000275412 Malus domestica MDP0000275412 I 0.887
Pm016214 Prunus mume Pm016214 I 0.882
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.882
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.880
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.875
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.873
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.855