MDP0000275412 (Malus domestica)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 MDP0000275412 T250766_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.948 0.897
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.923 0.632
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.921 0.529
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.911 0.559
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.906 0.618
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.887 0.647
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.883 0.618
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.883 0.618
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.881 0.559
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.872 0.632
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.872 0.632
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.872 0.632
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.854 0.529
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.854 0.529
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.854 0.529
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000275412 MADF 101 171

Links

Other MADF family TFs
Other Malus domestica TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.970
Pm016214 Prunus mume Pm016214 I 0.970
PK20543.1 Cannabis sativa PK20543.1 D 0.948
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.942
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.941
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.934
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.933
TCM_010751 Theobroma cacao TCM_010751 I 0.931
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.931
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.924
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.923
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.923
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.923
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.922
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.922
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.921
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.921
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.921
Ca_11315 Cicer arietinum Ca_11315 I 0.921
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.917
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.915
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.914
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.913
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.913
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.913
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.913
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.911
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.911
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.910
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.910
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.909
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.908
29929.m004704 Ricinus communis 29929.m004704 D 0.906
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.906
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.905
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.902
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.901
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.896
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.894
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.894
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.893
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.893
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.891
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.887
OS04G0486400 Oryza sativa OS04G0486400 D 0.887
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.887
Si036121m.g Setaria italica Si036121m.g I 0.886
Bo8g107400 Brassica oleracea Bo8g107400 I 0.885
Bra026903 Brassica rapa Bra026903 I 0.885
GT-1 Arabidopsis thaliana AT1G13450 D 0.883
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.883
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.883
Pm006885 Prunus mume Pm006885 I 0.883
MDP0000164819 Malus domestica MDP0000164819 D 0.883
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.881
OB04G23970 Oryza brachyantha OB04G23970 I 0.881
Cla023054 Citrullus lanatus Cla023054 I 0.881
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.881
Si010147m.g Setaria italica Si010147m.g I 0.876
mgf016368m Mimulus guttatus mgf016368m I 0.875
Bo5g017510 Brassica oleracea Bo5g017510 I 0.873
Bra019721 Brassica rapa Bra019721 I 0.873
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.870
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.864
GT-4 Arabidopsis thaliana AT3G25990 D 0.854
Bo2g138840 Brassica oleracea Bo2g138840 I 0.832
Bra036354 Brassica rapa Bra036354 I 0.832