Carubv10009313m.g (Capsella rubella)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Carubv10009313m.g T250622_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.967 0.757
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.964 0.757
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.964 0.757
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.964 0.757
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.962 0.786
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.960 0.614
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.945 0.757
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.944 0.657
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.944 0.657
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.944 0.657
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.941 0.757
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.939 0.600
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.931 0.700
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.913 0.729
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.908 0.700
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.886 0.471
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009313m MADF 99 180
Carubv10009582m MADF 99 182

Links

Other MADF family TFs
Other Capsella rubella TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.971
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.971
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.969
GT-1 Arabidopsis thaliana AT1G13450 D 0.968
Bra026903 Brassica rapa Bra026903 I 0.968
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.967
Bo5g017510 Brassica oleracea Bo5g017510 I 0.965
Bra019721 Brassica rapa Bra019721 I 0.965
Pm006885 Prunus mume Pm006885 I 0.962
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.962
MDP0000164819 Malus domestica MDP0000164819 D 0.962
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.960
Cla023054 Citrullus lanatus Cla023054 I 0.960
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.960
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.956
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.956
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.952
Bo8g107400 Brassica oleracea Bo8g107400 I 0.951
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.947
TCM_010751 Theobroma cacao TCM_010751 I 0.946
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.946
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.945
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.945
OS04G0486400 Oryza sativa OS04G0486400 D 0.945
Si036121m.g Setaria italica Si036121m.g I 0.945
GT-4 Arabidopsis thaliana AT3G25990 D 0.944
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.941
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.941
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.941
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.941
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.940
Si010147m.g Setaria italica Si010147m.g I 0.940
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.939
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.939
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.939
Ca_11315 Cicer arietinum Ca_11315 I 0.939
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.938
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.933
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.933
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.933
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.933
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.932
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.931
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.931
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.930
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.929
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.927
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.925
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.925
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.922
OB04G23970 Oryza brachyantha OB04G23970 I 0.919
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.919
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.917
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.916
PK20543.1 Cannabis sativa PK20543.1 D 0.913
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.908
29929.m004704 Ricinus communis 29929.m004704 D 0.908
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.903
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.901
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.901
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.898
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.897
Pm016214 Prunus mume Pm016214 I 0.897
Bo2g138840 Brassica oleracea Bo2g138840 I 0.893
Bra036354 Brassica rapa Bra036354 I 0.893
MDP0000275412 Malus domestica MDP0000275412 I 0.893
mgf016368m Mimulus guttatus mgf016368m I 0.891
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.886