VIT_03s0017g00440 (Vitis vinifera)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 VIT_03s0017g00440 T256775_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.750 0.750
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.750 0.750
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.750 0.750
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.708 0.708
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.708 0.708
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.708 0.708
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.708 0.708
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.708 0.708
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_03s0017g00440.t01 MADS box 10 57

Links

Other MADS box family TFs
Other Vitis vinifera TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pitx1 Mus musculus ENSMUSG00000021506 D 0.000
Crx Mus musculus ENSMUSG00000041578 D 0.000
ACEP26487 Atta cephalotes ACEP26487 I 0.000
CapteG187461 Capitella teleta CapteG187461 I 0.000
ENSCING00000013809 Ciona intestinalis ENSCING00000013809 I 0.000
lmx1a Danio rerio ENSDARG00000020354 I 0.000
ENSDNOG00000040223 Dasypus novemcinctus ENSDNOG00000040223 I 0.000
ENSDORG00000013256 Dipodomys ordii ENSDORG00000013256 I 0.000
HLX Echinops telfairi ENSETEG00000003298 I 0.000
HOXB3 Echinops telfairi ENSETEG00000007761 I 0.000
NKX3-1 Echinops telfairi ENSETEG00000018790 I 0.000
ENSMEUG00000002781 Macropus eugenii ENSMEUG00000002781 I 0.000
ENSPMAG00000010239 Petromyzon marinus ENSPMAG00000010239 I 0.000
HLX Sorex araneus ENSSARG00000009476 I 0.000
BARX2 Tupaia belangeri ENSTBEG00000000641 I 0.000
ENSTGUG00000004229 Taeniopygia guttata ENSTGUG00000004229 I 0.000
ENSTNIG00000018605 Tetraodon nigroviridis ENSTNIG00000018605 I 0.000
MICALL2 Takifugu rubripes ENSTRUG00000013527 I 0.000
nkx3.2 Takifugu rubripes ENSTRUG00000014438 I 0.000
BARX2 Vicugna pacos ENSVPAG00000010480 I 0.000
GB40331 Apis mellifera GB40331 I 0.000
GB42226 Apis mellifera GB42226 I 0.000
ISCW017713 Ixodes scapularis ISCW017713 I 0.000
MESCA002384 Megaselia scalaris MESCA002384 I 0.000
MESCA003695 Megaselia scalaris MESCA003695 I 0.000
NEMVEDRAFT_v1g81249 Nematostella vectensis NEMVEDRAFT_v1g81249 I 0.000
SINV23302 Solenopsis invicta SINV23302 I 0.000
Alligator_sinensis_CCG010661.1 Alligator sinensis Alligator_sinensis_CCG010661.1 I 0.000
Cmyd_10016952 Chelonia mydas Cmyd_10016952 I 0.000
Myotis_brandtii_MIMI_L668_10004071 Myotis brandtii Myotis_brandtii_MIMI_L668_10004071 I 0.000
Myotis_brandtii_MIMI_R196_10004074 Myotis brandtii Myotis_brandtii_MIMI_R196_10004074 I 0.000
e_gw.5.534.1 Branchiostoma floridae e_gw.5.534.1 I 0.000
e_gw.5.535.1 Branchiostoma floridae e_gw.5.535.1 I 0.000
e_gw.814.10.1 Branchiostoma floridae e_gw.814.10.1 I 0.000
Sakowv30000867m.g Saccoglossus kowalevskii Sakowv30000867m.g I 0.000
LDEC001243 Leptinotarsa decemlineata LDEC001243 I 0.000
LDEC010767 Leptinotarsa decemlineata LDEC010767 I 0.000
nkx2-4 Xenopus tropicalis XB-GENE-487481 I 0.000
en1 Xenopus tropicalis XB-GENE-5737237 I 0.000
Minc09570 Meloidogyne incognita Minc09570 I 0.000
AALB000327 Anopheles albimanus AALB000327 I 0.000
AARA005138 Anopheles arabiensis AARA005138 I 0.000
ACHR004287 Anopheles christyi ACHR004287 I 0.000
ADIR006768 Anopheles dirus ADIR006768 I 0.000
AEPI004828 Anopheles epiroticus AEPI004828 I 0.000
AFUN001295 Anopheles funestus AFUN001295 I 0.000
AMAM009154 Anopheles maculatus AMAM009154 I 0.000
AMEC016887 Anopheles melas AMEC016887 I 0.000
AMIN006279 Anopheles minimus AMIN006279 I 0.000
AQUA000678 Anopheles quadriannulatus AQUA000678 I 0.000
BGLB001705 Biomphalaria glabrata BGLB001705 I 0.000
BGLB005976 Biomphalaria glabrata BGLB005976 I 0.000
ANCDUO_09759 Ancylostoma duodenale ANCDUO_09759 I 0.000
ANCDUO_12194 Ancylostoma duodenale ANCDUO_12194 I 0.000
ASU_12993 Ascaris suum ASU_12993 I 0.000
BTMF_0000212801 Brugia timori BTMF_0000212801 I 0.000
CGOC_0000387301 Cylicostephanus goldi CGOC_0000387301 I 0.000
D918_03366 Trichuris suis D918_03366 I 0.000
DILT_0001226501 Diphyllobothrium latum DILT_0001226501 I 0.000
GPLIN_001352400 Globodera pallida GPLIN_001352400 I 0.000
HPLM_0001802901 Haemonchus placei HPLM_0001802901 I 0.000
MhA1_Contig138.frz3.gene24 Meloidogyne hapla MhA1_Contig138.frz3.gene24 I 0.000
nDi.2.2.2.g11780 Dirofilaria immitis nDi.2.2.2.g11780 I 0.000
nDi.2.2.2.g12576 Dirofilaria immitis nDi.2.2.2.g12576 I 0.000
OFLC_0001568201 Onchocerca flexuosa OFLC_0001568201 I 0.000
PXEA_0000709901 Protopolystoma xenopodis PXEA_0000709901 I 0.000
SBAD_0000661201 Soboliphyme baturini SBAD_0000661201 I 0.000
SCUD_0002251201 Schistosoma curassoni SCUD_0002251201 I 0.000
SPER_0003668801 Spirometra erinaceieuropaei SPER_0003668801 I 0.000
SSLN_0001021301 Schistocephalus solidus SSLN_0001021301 I 0.000
TMUE_s0047002700 Trichuris muris TMUE_s0047002700 I 0.000
TMUE_s0096002400 Trichuris muris TMUE_s0096002400 I 0.000
TRE_0001706901 Trichobilharzia regenti TRE_0001706901 I 0.000
CpipJ_CPIJ016099 Culex pipiens CpipJ_CPIJ016099 N 0.000
ACEP16435 Atta cephalotes ACEP16435 N 0.000
BGIBMGA011355 Bombyx mori BGIBMGA011355 N 0.000
CPIJ016099 Culex quinquefasciatus CPIJ016099 N 0.000
ENSACAG00000002042 Anolis carolinensis ENSACAG00000002042 N 0.000
ENSAPLG00000006374 Anas platyrhynchos ENSAPLG00000006374 N 0.000
DBX1 Canis familiaris ENSCAFG00000009813 N 0.000
ENSEEUG00000014300 Erinaceus europaeus ENSEEUG00000014300 N 0.000
ENSFALG00000012045 Ficedula albicollis ENSFALG00000012045 N 0.000
ENSGALG00000027554 Gallus gallus ENSGALG00000027554 N 0.000
ENSGMOG00000002488 Gadus morhua ENSGMOG00000002488 N 0.000
ENSOPRG00000015148 Ochotona princeps ENSOPRG00000015148 N 0.000
ENSTBEG00000005783 Tupaia belangeri ENSTBEG00000005783 N 0.000
ENSTGUG00000002708 Taeniopygia guttata ENSTGUG00000002708 N 0.000
ENSTNIG00000016985 Tetraodon nigroviridis ENSTNIG00000016985 N 0.000
ISCW011755 Ixodes scapularis ISCW011755 N 0.000
L798_10069 Zootermopsis nevadensis L798_10069 N 0.000
MCINX013655 Melitaea cinxia MCINX013655 N 0.000
NEMVEDRAFT_v1g94003 Nematostella vectensis NEMVEDRAFT_v1g94003 N 0.000
RPRC011993 Rhodnius prolixus RPRC011993 N 0.000
SINV13310 Solenopsis invicta SINV13310 N 0.000
Aan_R009659 Calypte anna Aan_R009659 N 0.000
Gfo_R010904 Geospiza fortis Gfo_R010904 N 0.000
Ocbimv22038272m.g Octopus bimaculoides Ocbimv22038272m.g N 0.000
CLEC012266 Cimex lectularius CLEC012266 N 0.000
LCUP015731 Lucilia cuprina LCUP015731 N 0.000
LDEC001875 Leptinotarsa decemlineata LDEC001875 N 0.000
PK01458.1 Cannabis sativa PK01458.1 N 0.000
AALB004801 Anopheles albimanus AALB004801 N 0.000
AARA005693 Anopheles arabiensis AARA005693 N 0.000
ACUA018681 Anopheles culicifacies ACUA018681 N 0.000
ADIR007401 Anopheles dirus ADIR007401 N 0.000
AEPI004567 Anopheles epiroticus AEPI004567 N 0.000
AFAF010529 Anopheles farauti AFAF010529 N 0.000
AFUN006141 Anopheles funestus AFUN006141 N 0.000
AFUN006142 Anopheles funestus AFUN006142 N 0.000
AMEC014801 Anopheles melas AMEC014801 N 0.000
AMIN011034 Anopheles minimus AMIN011034 N 0.000
AQUA011153 Anopheles quadriannulatus AQUA011153 N 0.000
ASTEI06400 Anopheles stephensi ASTEI06400 N 0.000
BGLB001079 Biomphalaria glabrata BGLB001079 N 0.000
PPAI003680 Phlebotomus papatasi PPAI003680 N 0.000
D915_01034 Fasciola hepatica D915_01034 N 0.000
HDID_0000158701 Hymenolepis diminuta HDID_0000158701 N 0.000
L892_g18619 Steinernema scapterisci L892_g18619 N 0.000
L892_g2163 Steinernema scapterisci L892_g2163 N 0.000
maker-nMf.1.1.scaf07538-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf07538-augustus-gene-0.6 N 0.000
SBAD_0000059701 Soboliphyme baturini SBAD_0000059701 N 0.000
scaffold37-EXSNAP2012.8 Pristionchus exspectatus scaffold37-EXSNAP2012.8 N 0.000
SCUD_0000356901 Schistosoma curassoni SCUD_0000356901 N 0.000
SPER_0000200201 Spirometra erinaceieuropaei SPER_0000200201 N 0.000
SSLN_0001900001 Schistocephalus solidus SSLN_0001900001 N 0.000
T265_04102 Opisthorchis viverrini T265_04102 N 0.000
TRE_0001634301 Trichobilharzia regenti TRE_0001634301 N 0.000
TRE_0001854501 Trichobilharzia regenti TRE_0001854501 N 0.000