Ca_13275 (Cicer arietinum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Ca_13275 T256914_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.844 0.844
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_13275 MADS box 10 55

Links

Other MADS box family TFs
Other Cicer arietinum TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.J02994 Eucalyptus grandis Eucgr.J02994 N
PK03816.1 Cannabis sativa PK03816.1 N
SapurV1A.3798s0010 Salix purpurea SapurV1A.3798s0010 N
SapurV1A.1168s0060 Salix purpurea SapurV1A.1168s0060 N
SapurV1A.0002s0250 Salix purpurea SapurV1A.0002s0250 N
orange1.1g048259m.g Citrus sinensis orange1.1g048259m.g N
MDP0000500940 Malus domestica MDP0000500940 N
MDP0000276691 Malus domestica MDP0000276691 N
Lus10035893.g Linum usitatissimum Lus10035893.g N
Lus10025772.g Linum usitatissimum Lus10025772.g N
Gorai.011G076900 Gossypium raimondii Gorai.011G076900 N
Gorai.010G228000 Gossypium raimondii Gorai.010G228000 N
Gorai.009G133300 Gossypium raimondii Gorai.009G133300 N
Gorai.006G098600 Gossypium raimondii Gorai.006G098600 N
gene05956-v1.0-hybrid Fragaria vesca gene05956-v1.0-hybrid N
evm.TU.supercontig_181.13 Carica papaya evm.TU.supercontig_181.13 N
GLYMA13G43651 Glycine max GLYMA13G43651 N
Ciclev10025757m.g Citrus clementina Ciclev10025757m.g N
mgf024433m Mimulus guttatus mgf024433m N
Cucsa.358990 Cucumis sativus Cucsa.358990 N
29872.m000548 Ricinus communis 29872.m000548 N
Pm027397 Prunus mume Pm027397 N
Pm013502 Prunus mume Pm013502 N
Cla015679 Citrullus lanatus Cla015679 N
VIT_09s0002g04700 Vitis vinifera VIT_09s0002g04700 N
TCM_028688 Theobroma cacao TCM_028688 N
PRUPE_ppa009556mg Prunus persica PRUPE_ppa009556mg N
POPTR_0003s05470 Populus trichocarpa POPTR_0003s05470 N
POPTR_0001s18000 Populus trichocarpa POPTR_0001s18000 N
PGSC0003DMG400031382 Solanum tuberosum PGSC0003DMG400031382 N
MTR_2g102227 Medicago truncatula MTR_2g102227 N
GLYMA15G01730 Glycine max GLYMA15G01730 N