Carubv10007456m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10007456m.g T257749_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10007456m MADS box 10 56

Links

Other MADS box family TFs
Other Capsella rubella TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL78 Arabidopsis thaliana AT5G65330 D 0.708
fgenesh2_kg.8__2584__AT5G65330.1 Arabidopsis lyrata fgenesh2_kg.8__2584__AT5G65330.1 I 0.708
Bostr.0568s0255 Boechera stricta Bostr.0568s0255 I 0.717
Bostr.10058s0014 Boechera stricta Bostr.10058s0014 I 0.702
Carubv10006654m.g Capsella rubella Carubv10006654m.g I 0.766
Carubv10007591m.g Capsella rubella Carubv10007591m.g I 0.809
Carubv10015354m.g Capsella rubella Carubv10015354m.g I 0.915