Carubv10006654m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10006654m.g T257747_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.766 0.766
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10006654m MADS box 7 53

Links

Other MADS box family TFs
Other Capsella rubella TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10007591m.g Capsella rubella Carubv10007591m.g I 0.809
Carubv10015354m.g Capsella rubella Carubv10015354m.g I 0.809
Al_scaffold_0007_3741 Arabidopsis lyrata Al_scaffold_0007_3741 I 0.787
AGL77 Arabidopsis thaliana AT5G38740 I 0.787
AGL81 Arabidopsis thaliana AT5G39750 I 0.787
AGL76 Arabidopsis thaliana AT5G40120 I 0.787
scaffold_704060.1 Arabidopsis lyrata scaffold_704060.1 I 0.783
Bostr.3751s0030 Boechera stricta Bostr.3751s0030 I 0.771
AGL105 Arabidopsis thaliana AT5G37415 I 0.769
AGL98 Arabidopsis thaliana AT5G39810 I 0.766
Bostr.10058s0014 Boechera stricta Bostr.10058s0014 I 0.766
Bostr.3751s0043 Boechera stricta Bostr.3751s0043 I 0.766
Carubv10007456m.g Capsella rubella Carubv10007456m.g I 0.766
fgenesh2_kg.7__3412__AT5G41200.1 Arabidopsis lyrata fgenesh2_kg.7__3412__AT5G41200.1 I 0.761
AGL75 Arabidopsis thaliana AT5G41200 I 0.750
AGL78 Arabidopsis thaliana AT5G65330 D 0.750
Bostr.3751s0031 Boechera stricta Bostr.3751s0031 I 0.745
AGL101 Arabidopsis thaliana AT5G27050 I 0.733
AGL51 Arabidopsis thaliana AT4G02235 I 0.729
fgenesh2_kg.8__2584__AT5G65330.1 Arabidopsis lyrata fgenesh2_kg.8__2584__AT5G65330.1 I 0.729
Bostr.3751s0039 Boechera stricta Bostr.3751s0039 I 0.729
AGL43 Arabidopsis thaliana AT5G40220 I 0.723
Thhalv10005313m.g Eutrema salsugineum Thhalv10005313m.g I 0.723
Bostr.0568s0255 Boechera stricta Bostr.0568s0255 I 0.717
Thhalv10028282m.g Eutrema salsugineum Thhalv10028282m.g I 0.717
AGL52 Arabidopsis thaliana AT4G11250 I 0.702
Bo00615s090 Brassica oleracea Bo00615s090 I 0.702
Bo4g139260 Brassica oleracea Bo4g139260 I 0.700