Al_scaffold_0007_3741 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Al_scaffold_0007_3741 T252789_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.766 0.766
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0007_3741 MADS box 12 58

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL77 Arabidopsis thaliana AT5G38740 I 1.000
AGL81 Arabidopsis thaliana AT5G39750 I 1.000
AGL76 Arabidopsis thaliana AT5G40120 I 1.000
scaffold_704060.1 Arabidopsis lyrata scaffold_704060.1 I 1.000
AGL98 Arabidopsis thaliana AT5G39810 I 0.979
fgenesh2_kg.7__3412__AT5G41200.1 Arabidopsis lyrata fgenesh2_kg.7__3412__AT5G41200.1 I 0.978
AGL75 Arabidopsis thaliana AT5G41200 I 0.977
AGL43 Arabidopsis thaliana AT5G40220 I 0.936
AGL105 Arabidopsis thaliana AT5G37415 I 0.923
Bostr.10058s0014 Boechera stricta Bostr.10058s0014 I 0.851
Bostr.3751s0043 Boechera stricta Bostr.3751s0043 I 0.851
Bra025607 Brassica rapa Bra025607 N 0.837
Bostr.3751s0031 Boechera stricta Bostr.3751s0031 I 0.830
Bo4g139620 Brassica oleracea Bo4g139620 N 0.818
Bostr.3751s0030 Boechera stricta Bostr.3751s0030 I 0.812
Bostr.3751s0039 Boechera stricta Bostr.3751s0039 I 0.812
Bra025609 Brassica rapa Bra025609 I 0.809
Carubv10006654m.g Capsella rubella Carubv10006654m.g I 0.787
Thhalv10028282m.g Eutrema salsugineum Thhalv10028282m.g I 0.783
Bo4g139260 Brassica oleracea Bo4g139260 I 0.775
Bo00615s090 Brassica oleracea Bo00615s090 I 0.766
Bo4g139560 Brassica oleracea Bo4g139560 N 0.766
Bo4g139640 Brassica oleracea Bo4g139640 N 0.766
Carubv10007591m.g Capsella rubella Carubv10007591m.g I 0.766
Bostr.0568s0255 Boechera stricta Bostr.0568s0255 I 0.761
AGL78 Arabidopsis thaliana AT5G65330 D 0.750
fgenesh2_kg.8__2584__AT5G65330.1 Arabidopsis lyrata fgenesh2_kg.8__2584__AT5G65330.1 I 0.750
Bostr.3751s0025 Boechera stricta Bostr.3751s0025 I 0.750
AGL51 Arabidopsis thaliana AT4G02235 I 0.745
Bra025619 Brassica rapa Bra025619 N 0.745
Bra031864 Brassica rapa Bra031864 I 0.745
Thhalv10005313m.g Eutrema salsugineum Thhalv10005313m.g I 0.745
fgenesh2_kg.6__2748__AT5G27944.1 Arabidopsis lyrata fgenesh2_kg.6__2748__AT5G27944.1 N 0.723
scaffold_602835.1 Arabidopsis lyrata scaffold_602835.1 N 0.723
Thhalv10028184m.g Eutrema salsugineum Thhalv10028184m.g I 0.723
AT5G26865 Arabidopsis thaliana AT5G26865 N 0.714
AGL89 Arabidopsis thaliana AT5G27580 N 0.708
AGL52 Arabidopsis thaliana AT4G11250 I 0.702
fgenesh2_kg.6__2751__AT5G27070.1 Arabidopsis lyrata fgenesh2_kg.6__2751__AT5G27070.1 N 0.702
Carubv10015354m.g Capsella rubella Carubv10015354m.g I 0.702