scaffold_602835.1 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 scaffold_602835.1 T256124_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_602835.1 MADS box 27 74

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.6__2748__AT5G27944.1 Arabidopsis lyrata fgenesh2_kg.6__2748__AT5G27944.1 N 1.000
fgenesh2_kg.6__2751__AT5G27070.1 Arabidopsis lyrata fgenesh2_kg.6__2751__AT5G27070.1 N 0.979
AGL89 Arabidopsis thaliana AT5G27580 N 0.958
AT5G27944 Arabidopsis thaliana AT5G27944 N 0.917
AGL54 Arabidopsis thaliana AT5G27090 N 0.915
AT5G26865 Arabidopsis thaliana AT5G26865 N 0.886
AGL93 Arabidopsis thaliana AT5G26950 N 0.875
AGL53 Arabidopsis thaliana AT5G27070 N 0.875
Carubv10003642m.g Capsella rubella Carubv10003642m.g N 0.830
Cagra.29077s0001 Capsella grandiflora Cagra.29077s0001 N 0.809
Carubv10003716m.g Capsella rubella Carubv10003716m.g N 0.792
AGL105 Arabidopsis thaliana AT5G37415 I 0.769
Bostr.29827s0112 Boechera stricta Bostr.29827s0112 N 0.766
Al_scaffold_0007_3741 Arabidopsis lyrata Al_scaffold_0007_3741 I 0.723
AGL77 Arabidopsis thaliana AT5G38740 I 0.723
AGL81 Arabidopsis thaliana AT5G39750 I 0.723
AGL76 Arabidopsis thaliana AT5G40120 I 0.723
scaffold_704060.1 Arabidopsis lyrata scaffold_704060.1 I 0.717
AGL75 Arabidopsis thaliana AT5G41200 I 0.705
Thhalv10002808m.g Eutrema salsugineum Thhalv10002808m.g N 0.705
AGL98 Arabidopsis thaliana AT5G39810 I 0.702
Bostr.10058s0014 Boechera stricta Bostr.10058s0014 I 0.702
Thhalv10005435m.g Eutrema salsugineum Thhalv10005435m.g N 0.702
Thhalv10005452m.g Eutrema salsugineum Thhalv10005452m.g N 0.702