HmN_000858800 (Hymenolepis microstoma)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 HmN_000858800 T259583_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.708 0.708
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.708 0.708
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.708 0.708
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.708 0.708
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.708 0.708
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.708 0.708
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.708 0.708
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.708 0.708
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.708 0.708
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.708 0.708
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.708 0.708
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.708 0.708
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.708 0.708
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.708 0.708
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.708 0.708
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.708 0.708
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.708 0.708
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.708 0.708
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.708 0.708
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.708 0.708
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.708 0.708
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.708 0.708
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HmN_000858800 MADS box 63 110

Links

Other MADS box family TFs
Other Hymenolepis microstoma TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
srfA Dictyostelium discoideum DDB_G0281387 D 0.708
SRF Homo sapiens ENSG00000112658 D 0.708
Srf Mus musculus ENSMUSG00000015605 D 0.708
MESCA001358 Megaselia scalaris MESCA001358 I 0.741
estExt_fgeneshDP_kg.C_1450001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_1450001 I 0.708
Pvit_03053 Pogona vitticeps Pvit_03053 I 0.708
ENSP00000265354 Macaca fascicularis ENSP00000265354 I 0.700
ENSBTAP00000016981-D1 Bos grunniens ENSBTAP00000016981-D1 I 0.708
Brh_R011000 Buceros rhinoceros Brh_R011000 I 0.769
TRV_05844 Trichophyton verrucosum TRV_05844 I 0.703
SNOG_07764 Phaeosphaeria nodorum SNOG_07764 I 0.724
Smp_097730 Schistosoma mansoni Smp_097730 I 0.875
SINV23954 Solenopsis invicta SINV23954 I 0.704
fgenesh1_kg.C_scaffold_2000029 Cochliobolus heterostrophus C5 fgenesh1_kg.C_scaffold_2000029 I 0.724
HelroG137972 Helobdella robusta HelroG137972 I 0.729
ENSXMAG00000006964 Xiphophorus maculatus ENSXMAG00000006964 I 0.708
SRF Vicugna pacos ENSVPAG00000008912 I 0.769
SRF Tursiops truncatus ENSTTRG00000007017 I 0.708
SRF Takifugu rubripes ENSTRUG00000017531 I 0.708
srfa Takifugu rubripes ENSTRUG00000011448 I 0.708
SRF Tetraodon nigroviridis ENSTNIG00000013420 I 0.708
srfa Tetraodon nigroviridis ENSTNIG00000002923 I 0.708
CAOG_01457 Capsaspora owczarzaki CAOG_01457 I 0.708
SRF Sus scrofa ENSSSCG00000001661 I 0.708
EmuJ_000377500 Echinococcus multilocularis EmuJ_000377500 I 0.979
TTAC_0000870401 Hydatigera taeniaeformis TTAC_0000870401 I 0.979
TsM_000925700 Taenia solium TsM_000925700 I 0.979
TASK_0000457101 Taenia asiatica TASK_0000457101 I 0.979
SROB_0002013401 Schistosoma rodhaini SROB_0002013401 I 0.896
SMTD_0001950801 Schistosoma mattheei SMTD_0001950801 I 0.875
SMRZ_0002507801 Schistosoma margrebowiei SMRZ_0002507801 I 0.875
SCUD_0000460501 Schistosoma curassoni SCUD_0000460501 I 0.875
MCOS_0000609801 Mesocestoides corti MCOS_0000609801 I 0.979
HNAJ_0000775201 Hymenolepis nana HNAJ_0000775201 I 1.000
HDID_0000576901 Hymenolepis diminuta HDID_0000576901 I 1.000
estExt_fgeneshNG_pg.C_520029 Naegleria gruberi estExt_fgeneshNG_pg.C_520029 I 0.708
ECPE_0001369301 Echinostoma caproni ECPE_0001369301 I 0.812
ECANG7_07506 Echinococcus canadensis ECANG7_07506 I 0.979
A_01192 Schistosoma haematobium A_01192 I 0.875
ASTEI07120 Anopheles stephensi ASTEI07120 I 0.704
srf.L Xenopus laevis XB-GENE-864819 I 0.708
srf Xenopus tropicalis XB-GENE-482036 I 0.708
Sjc_0026780 Schistosoma japonicum Sjc_0026780 I 0.875
EFA85834.1 Polysphondylium pallidum EFA85834.1 I 0.708
ENSSTOG00000014222 Ictidomys tridecemlineatus ENSSTOG00000014222 I 0.708
SRF Callithrix jacchus ENSCJAG00000005223 I 0.708
ENSGMOG00000001540 Gadus morhua ENSGMOG00000001540 I 0.769
SRF Gorilla gorilla ENSGGOG00000006293 I 0.769
Srf Rattus norvegicus ENSRNOG00000018232 I 0.708
SRF Gasterosteus aculeatus ENSGACG00000003778 I 0.708
SRF Felis catus ENSFCAG00000025180 I 0.708
SRF Equus caballus ENSECAG00000009068 I 0.708
SRF Dasypus novemcinctus ENSDNOG00000014133 I 0.708
srfb Danio rerio ENSDARG00000102867 I 0.708
srfa Danio rerio ENSDARG00000053918 I 0.708
ENSCSAG00000011622 Chlorocebus sabaeus ENSCSAG00000011622 I 0.708
srfa Gasterosteus aculeatus ENSGACG00000020002 I 0.708
SRF Canis familiaris ENSCAFG00000001829 I 0.708
SRF Bos taurus ENSBTAG00000012777 I 0.708
ENSAMXG00000003129 Astyanax mexicanus ENSAMXG00000003129 I 0.708
ENSAMXG00000001100 Astyanax mexicanus ENSAMXG00000001100 I 0.708
ENSAMEG00000012452 Ailuropoda melanoleuca ENSAMEG00000012452 I 0.708
SRF Anolis carolinensis ENSACAG00000004798 I 0.708
AWRI1499_3592 Brettanomyces bruxellensis AWRI1499_3592 I 0.724
ARB_02013 Arthroderma benhamiae ARB_02013 I 0.703
SNOG_07763 Stagonospora nodorum SNOG_07763 I 0.724
ENSONIG00000010505 Oreochromis niloticus ENSONIG00000010505 I 0.708
SRF Pteropus vampyrus ENSPVAG00000008728 I 0.708
SRF Pan troglodytes ENSPTRG00000018189 I 0.708
ENSPPYG00000016633 Pongo abelii ENSPPYG00000016633 I 0.708
ENSPFOG00000022718 Poecilia formosa ENSPFOG00000022718 I 0.708
ENSPFOG00000018770 Poecilia formosa ENSPFOG00000018770 I 0.708
ENSPANG00000006410 Papio anubis ENSPANG00000006410 I 0.708
SRF Oryzias latipes ENSORLG00000013036 I 0.708
ENSOPRG00000002509 Ochotona princeps ENSOPRG00000002509 I 0.769
ENSGMOG00000008883 Gadus morhua ENSGMOG00000008883 I 0.708
ENSONIG00000010161 Oreochromis niloticus ENSONIG00000010161 I 0.708
SRF Otolemur garnettii ENSOGAG00000029623 I 0.708
SRF Oryctolagus cuniculus ENSOCUG00000002892 I 0.708
ENSNLEG00000004203 Nomascus leucogenys ENSNLEG00000004203 I 0.708
ENSMPUG00000013090 Mustela putorius furo ENSMPUG00000013090 I 0.708
SRF Monodelphis domestica ENSMODG00000018981 I 0.708
SRF Macaca mulatta ENSMMUG00000000033 I 0.708
ENSMICG00000008327 Microcebus murinus ENSMICG00000008327 I 0.708
ENSLOCG00000015887 Lepisosteus oculatus ENSLOCG00000015887 I 0.708
ENSLACG00000014404 Latimeria chalumnae ENSLACG00000014404 I 0.708
csin112160 Clonorchis sinensis csin112160 N 0.812
SPER_0002407601 Spirometra erinaceieuropaei SPER_0002407601 N 0.833
SPER_0003232401 Spirometra erinaceieuropaei SPER_0003232401 N 0.833
SSLN_0001407901 Schistocephalus solidus SSLN_0001407901 N 0.833
T265_07052 Opisthorchis viverrini T265_07052 N 0.812
SMU15039528 Schmidtea mediterranea SMU15039528 N 0.771