RVE6 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT5G52660 T266564_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE6
M01081_2.00		 Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151		 (Direct) (Direct)
RVE6
M07138_2.00		 Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a		 (Direct) (Direct)
RVE6
M07139_2.00		 Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.899 0.978
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.891 0.935
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.891 0.935
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.891 0.935
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.891 0.935
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.891 0.935
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.808 0.848
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.793 0.870
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.793 0.870
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.793 0.870
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.697 0.674
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.661 0.630
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.661 0.630
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.661 0.630
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01081_2.00 Myb 51 96

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G52660.1 Myb 72 117
AT5G52660.2 Myb 72 117

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

323 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC029 Arabidopsis thaliana AT1G69490 D 0.000
Traes_5BL_CC18CAD72 Triticum aestivum Traes_5BL_CC18CAD72 D 0.000
Eucgr.G02486 Eucalyptus grandis Eucgr.G02486 I 0.000
Ca_18090 Cicer arietinum Ca_18090 I 0.000
Eucgr.B03208 Eucalyptus grandis Eucgr.B03208 I 0.000
Ciclev10032304m.g Citrus clementina Ciclev10032304m.g I 0.000
Carubv10020776m.g Capsella rubella Carubv10020776m.g I 0.000
Cagra.0887s0008 Capsella grandiflora Cagra.0887s0008 I 0.000
Bostr.10273s0418 Boechera stricta Bostr.10273s0418 I 0.000
Aquca_002_00663 Aquilegia coerulea Aquca_002_00663 I 0.000
mgf022118m Mimulus guttatus mgf022118m I 0.000
mgf016848m Mimulus guttatus mgf016848m I 0.000
Cucsa.284890 Cucumis sativus Cucsa.284890 I 0.000
cassava1317.valid.m1 Manihot esculenta cassava1317.valid.m1 I 0.000
29813.m001519 Ricinus communis 29813.m001519 I 0.000
Pm006470 Prunus mume Pm006470 I 0.000
Cla010367 Citrullus lanatus Cla010367 I 0.000
chr2.CM0641.320.nc Lotus japonicus chr2.CM0641.320.nc I 0.000
MDP0000481448 Malus domestica MDP0000481448 I 0.000
AMTR_s00119p00040230 Amborella trichopoda AMTR_s00119p00040230 I 0.000
PK25119.1 Cannabis sativa PK25119.1 I 0.000
Thhalv10018997m.g Eutrema salsugineum Thhalv10018997m.g I 0.000
SapurV1A.0801s0090 Salix purpurea SapurV1A.0801s0090 I 0.000
SapurV1A.0063s0620 Salix purpurea SapurV1A.0063s0620 I 0.000
SapurV1A.0063s0610 Salix purpurea SapurV1A.0063s0610 I 0.000
Pavir.J23516 Panicum virgatum Pavir.J23516 I 0.000
orange1.1g023197m.g Citrus sinensis orange1.1g023197m.g I 0.000
evm.TU.supercontig_1.48 Carica papaya evm.TU.supercontig_1.48 I 0.000
MDP0000262990 Malus domestica MDP0000262990 I 0.000
Lus10037156.g Linum usitatissimum Lus10037156.g I 0.000
Lus10036773.g Linum usitatissimum Lus10036773.g I 0.000
Lus10030446.g Linum usitatissimum Lus10030446.g I 0.000
Lus10026617.g Linum usitatissimum Lus10026617.g I 0.000
Gorai.008G179900 Gossypium raimondii Gorai.008G179900 I 0.000
Gorai.005G142300 Gossypium raimondii Gorai.005G142300 I 0.000
OB12G11500 Oryza brachyantha OB12G11500 I 0.000
Bo6g095510 Brassica oleracea Bo6g095510 I 0.000
Bo6g108930 Brassica oleracea Bo6g108930 I 0.000
Bra004385 Brassica rapa Bra004385 I 0.000
F775_26965 Aegilops tauschii F775_26965 I 0.000
NAP Arabidopsis lyrata fgenesh2_kg.2__1206__AT1G69490.1 I 0.000
GLYMA01G06150 Glycine max GLYMA01G06150 I 0.000
GLYMA02G12220 Glycine max GLYMA02G12220 I 0.000
GLYMA07G35630 Glycine max GLYMA07G35630 I 0.000
GLYMA20G04400 Glycine max GLYMA20G04400 I 0.000
GSMUA_Achr6G32320_001 Musa acuminata GSMUA_Achr6G32320_001 I 0.000
GSMUA_Achr7G21770_001 Musa acuminata GSMUA_Achr7G21770_001 I 0.000
MLOC_4747 Hordeum vulgare MLOC_4747 I 0.000
MTR_4g081870 Medicago truncatula MTR_4g081870 I 0.000
MTR_5g041940 Medicago truncatula MTR_5g041940 I 0.000
OB11G11210 Oryza brachyantha OB11G11210 I 0.000
Ca_16379 Cicer arietinum Ca_16379 I 0.000
OMERI12G00480 Oryza meridionalis OMERI12G00480 I 0.000
OPUNC11G01330 Oryza punctata OPUNC11G01330 I 0.000
OPUNC12G01370 Oryza punctata OPUNC12G01370 I 0.000
PGSC0003DMG400002824 Solanum tuberosum PGSC0003DMG400002824 I 0.000
PGSC0003DMG400018435 Solanum tuberosum PGSC0003DMG400018435 I 0.000
POPTR_0008s08850 Populus trichocarpa POPTR_0008s08850 I 0.000
POPTR_0010s17350 Populus trichocarpa POPTR_0010s17350 I 0.000
Sb05g001580 Sorghum bicolor Sb05g001580 I 0.000
Sb08g001940 Sorghum bicolor Sb08g001940 I 0.000
Si010410m.g Setaria italica Si010410m.g I 0.000
Si026530m.g Setaria italica Si026530m.g I 0.000
Solyc04g005610.2 Solanum lycopersicum Solyc04g005610.2 I 0.000
Solyc05g007770.2 Solanum lycopersicum Solyc05g007770.2 I 0.000
TCM_011671 Theobroma cacao TCM_011671 I 0.000
NAP Vitis vinifera VIT_01s0026g02710 I 0.000