Bo3g018460 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo3g018460 T267220_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G58900
M07146_2.00 		Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD		 Dap-seq
OMalley et al.(2016)
At5g58900_col_a 		0.872 0.968
AT5G58900
M07147_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a 		0.872 0.968
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.750 0.849
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.750 0.849
PK27693.1
M01285_2.00 		Cannabis sativa
NNYTATCBNN
NNVGATARNN		 PBM
Lambert et al.(2019)
pTH11302 		0.681 0.828
AT5G05790
M07119_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWHH
DDWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g05790_col_a 		0.677 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g018460.1 Myb 141 188

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_083_00054 Aquilegia coerulea Aquca_083_00054 I
POPTR_0005s18620 Populus trichocarpa POPTR_0005s18620 I
Sb09g016570 Sorghum bicolor Sb09g016570 I
Si024344m.g Setaria italica Si024344m.g I
Solyc02g092930.1 Solanum lycopersicum Solyc02g092930.1 I
Solyc04g078420.1 Solanum lycopersicum Solyc04g078420.1 I
TCM_007138 Theobroma cacao TCM_007138 I
mgf014089m Mimulus guttatus mgf014089m I
mgf023922m Mimulus guttatus mgf023922m I
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I
PGSC0003DMG400024983 Solanum tuberosum PGSC0003DMG400024983 I
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I
Gorai.002G009300 Gossypium raimondii Gorai.002G009300 I
Gorai.007G218100 Gossypium raimondii Gorai.007G218100 I
Lus10010238.g Linum usitatissimum Lus10010238.g I
Lus10014103.g Linum usitatissimum Lus10014103.g I
Pavir.J33236 Panicum virgatum Pavir.J33236 I
SapurV1A.0708s0130 Salix purpurea SapurV1A.0708s0130 I
CM0528.210.nd Lotus japonicus CM0528.210.nd I
PGSC0003DMG400003316 Solanum tuberosum PGSC0003DMG400003316 I
BGIOSGA018239 Oryza indica BGIOSGA018239 I
Bo3g153550 Brassica oleracea Bo3g153550 I
GLYMA05G21220 Glycine max GLYMA05G21220 I
GSMUA_Achr1G26140_001 Musa acuminata GSMUA_Achr1G26140_001 I
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I
GSMUA_Achr4G20150_001 Musa acuminata GSMUA_Achr4G20150_001 I
LPERR05G10150 Leersia perrieri LPERR05G10150 I
MTR_4g094982 Medicago truncatula MTR_4g094982 I
OGLUM05G13590 Oryza glumaepatula OGLUM05G13590 I
OMERI05G11510 Oryza meridionalis OMERI05G11510 I
ONIVA05G13470 Oryza nivara ONIVA05G13470 I
OPUNC05G11020 Oryza punctata OPUNC05G11020 I
ORGLA05G0109400 Oryza glaberrima ORGLA05G0109400 I
ORUFI05G13850 Oryza rufipogon ORUFI05G13850 I
BGIOSGA018238 Oryza indica BGIOSGA018238 I
MLOC_26177 Hordeum vulgare MLOC_26177 N
BRADI2G28910 Brachypodium distachyon BRADI2G28910 N