Bo5g002430 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo5g002430 T267348_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.872 0.913
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.864 0.891
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.864 0.891
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.864 0.891
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.864 0.891
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.864 0.891
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.862 0.891
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.862 0.891
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.862 0.891
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.842 0.870
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.828 0.935
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.828 0.935
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.828 0.935
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.700 0.674
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.652
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.652
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g002430.1 Myb 48 93

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

325 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HINFP Homo sapiens ENSG00000172273 D
ENSNLEG00000007387 Nomascus leucogenys ENSNLEG00000007387 I
Myotis_brandtii_HINFP_10033522 Myotis brandtii Myotis_brandtii_HINFP_10033522 I
ENSP00000318085 Macaca fascicularis ENSP00000318085 I
Aan_R014383 Calypte anna Aan_R014383 I
HINFP Tursiops truncatus ENSTTRG00000002809 I
ENSTSYG00000012226 Tarsius syrichta ENSTSYG00000012226 I
ENSSTOG00000014457 Ictidomys tridecemlineatus ENSSTOG00000014457 I
HINFP Sus scrofa ENSSSCG00000015112 I
ENSSHAG00000009681 Sarcophilus harrisii ENSSHAG00000009681 I
HINFP Pteropus vampyrus ENSPVAG00000005598 I
HINFP Pan troglodytes ENSPTRG00000004372 I
ENSPPYG00000003957 Pongo abelii ENSPPYG00000003957 I
HINFP Procavia capensis ENSPCAG00000013133 I
ENSPANG00000005040 Papio anubis ENSPANG00000005040 I
HINFP Otolemur garnettii ENSOGAG00000007304 I
ENSAMEG00000000033 Ailuropoda melanoleuca ENSAMEG00000000033 I
ENSMPUG00000005286 Mustela putorius furo ENSMPUG00000005286 I
HINFP Macaca mulatta ENSMMUG00000014877 I
HINFP Myotis lucifugus ENSMLUG00000000455 I
HINFP Microcebus murinus ENSMICG00000002733 I
ENSMEUG00000015482 Macropus eugenii ENSMEUG00000015482 I
HINFP Loxodonta africana ENSLAFG00000017500 I
HINFP Gorilla gorilla ENSGGOG00000008087 I
HINFP Felis catus ENSFCAG00000001165 I
HINFP Equus caballus ENSECAG00000024938 I
ENSCSAG00000002522 Chlorocebus sabaeus ENSCSAG00000002522 I
HINFP Cavia porcellus ENSCPOG00000006488 I
HINFP Canis familiaris ENSCAFG00000012224 I