Bra012579 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra012579 T267844_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.829 0.935
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.829 0.935
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra012579.1-P Myb 182 228
Bra012579.1-P Myb 234 279

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB98 Arabidopsis thaliana AT4G18770 D 0.829
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.720
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I 0.854
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.737
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.672
30147.m013937 Ricinus communis 30147.m013937 I 0.697
Pm024743 Prunus mume Pm024743 I 0.691
Cla019490 Citrullus lanatus Cla019490 I 0.721
Ca_17087 Cicer arietinum Ca_17087 I 0.716
Ca_07482 Cicer arietinum Ca_07482 I 0.711
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.756
Traes_7DS_E27ECBC6E Triticum aestivum Traes_7DS_E27ECBC6E I 0.727
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.756
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.756
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.743
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.744
TCM_012087 Theobroma cacao TCM_012087 I 0.715
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.695
Si039046m.g Setaria italica Si039046m.g I 0.740
MYB98 Arabidopsis lyrata scaffold_702543.1 I 0.846
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.723
Lus10039966.g Linum usitatissimum Lus10039966.g I 0.708
Thhalv10026824m.g Eutrema salsugineum Thhalv10026824m.g I 0.842
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.691
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.691
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.703
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.708
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.740
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.740
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.675
MDP0000215359 Malus domestica MDP0000215359 I 0.691
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.705
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I 0.699
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.728
Lus10002384.g Linum usitatissimum Lus10002384.g I 0.726
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.715
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.675
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.707
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.736
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.675
Carubv10006734m.g Capsella rubella Carubv10006734m.g I 0.854
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I 0.854
GLYMA06G19280 Glycine max GLYMA06G19280 I 0.721
OB12G14410 Oryza brachyantha OB12G14410 I 0.685
OB06G13860 Oryza brachyantha OB06G13860 I 0.747
MTR_7g037260 Medicago truncatula MTR_7g037260 I 0.673
MTR_5g049190 Medicago truncatula MTR_5g049190 I 0.680
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.713
LPERR12G04190 Leersia perrieri LPERR12G04190 I 0.689
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.747
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.694
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.718
GRMZM2G302549 Zea mays GRMZM2G302549 I 0.687
OBART06G04170 Oryza barthii OBART06G04170 I 0.747
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.699
F775_22212 Aegilops tauschii F775_22212 I 0.756
Bra020992 Brassica rapa Bra020992 I 0.842
Bra013346 Brassica rapa Bra013346 I 0.854
Bo7g106240 Brassica oleracea Bo7g106240 I 0.896
Bo3g157300 Brassica oleracea Bo3g157300 I 0.851
Bo1g019910 Brassica oleracea Bo1g019910 I 0.854
BGIOSGA036541 Oryza indica BGIOSGA036541 I 0.705
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.747
ONIVA12G04220 Oryza nivara ONIVA12G04220 I 0.705
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.686
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.695
OS06G0162700 Oryza sativa OS06G0162700 I 0.747
ORUFI12G05180 Oryza rufipogon ORUFI12G05180 I 0.696
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.747
ORGLA12G0042300 Oryza glaberrima ORGLA12G0042300 I 0.705
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.747
OPUNC12G04510 Oryza punctata OPUNC12G04510 I 0.705
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.747
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.691
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.747
OMERI12G02760 Oryza meridionalis OMERI12G02760 I 0.705
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.747
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.747
OLONG_008158 Oryza longistaminata OLONG_008158 I 0.705
OGLUM12G05330 Oryza glumaepatula OGLUM12G05330 I 0.705
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.747
OBART12G04500 Oryza barthii OBART12G04500 I 0.705
OBART12G04480 Oryza barthii OBART12G04480 I 0.705