CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

POPTR_0005s12050 *(Populus trichocarpa)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	POPTR_0005s12050	T278280_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MYB98 M02301_2.00	Arabidopsis thaliana	NNGTAACGKMN	NKMCGTTACNN	PBM Weirauch et al.(2014) pTH8148	0.741	0.849
MYB98 M07108_2.00	Arabidopsis thaliana	DWWWHGTAACGKWHD	HDWMCGTTACDWWWH	Dap-seq OMalley et al.(2016) MYB98_col_a	0.741	0.849
MYB118 M07087_2.00	Arabidopsis thaliana	DHWDHRDMCGTTACDWW	WWHGTAACGKHYDHWDH	Dap-seq OMalley et al.(2016) MYB118_col_a	0.669	0.753
MYB118 M07088_2.00	Arabidopsis thaliana	DWWWYGTAACGKHYR	YRDMCGTTACRWWWH	Dap-seq OMalley et al.(2016) MYB118_colamp_a	0.669	0.753
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
POPTR_0005s12050.1	Myb	173	219	KGQWTAEEDSLLIRLVDEFGIRKWSHIAQIFPGRIGKQCRERWHNHL
POPTR_0005s12050.1	Myb	225	270	KDIWSEEEDRVLIQAHKEIGNKWAEIAKSLPGRTENSIKNHWNATK

Links
Other Myb/SANT family TFs
Other *Populus trichocarpa* TFs