scaffold_800056.1 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 scaffold_800056.1 T279417_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KUA1
M02312_2.00 		Arabidopsis thaliana
NNTTATCCDN
NHGGATAANN		 PBM
Weirauch et al.(2014)
pTH7647 		0.909 1.000
KUA1
M07136_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWW
WWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a 		0.909 1.000
KUA1
M07137_2.00 		Arabidopsis thaliana
HHWDYHTTATCCAHW
WDTGGATAADRHWDD		 Dap-seq
OMalley et al.(2016)
At5g47390_col_b 		0.909 1.000
PK00738.1
M02346_2.00 		Cannabis sativa
NYWATCYDNN
NNHRGATWRN		 PBM
Weirauch et al.(2014)
pTH9487 		0.888 0.936
fgenesh1_pg.scaffold_70000111
M02342_2.00 		Physcomitrella patens
NNHNATCBN
NVGATNDNN		 PBM
Weirauch et al.(2014)
pTH8492 		0.850 0.936
AT3G16350
M01078_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Sullivan et al.(2014)
pTH7149 		0.849 0.915
PK29550.1
M02358_2.00 		Cannabis sativa
NNHDATCYNN
NNRGATHDNN		 PBM
Weirauch et al.(2014)
pTH9595 		0.839 0.894
PK17526.1
M02353_2.00 		Cannabis sativa
NNTTATCCAN
NTGGATAANN		 PBM
Weirauch et al.(2014)
pTH9588 		0.832 0.915
PK23829.1
M02355_2.00 		Cannabis sativa
VTTATCCD
HGGATAAB		 PBM
Weirauch et al.(2014)
pTH9592 		0.821 0.872
AT5G61620
M07149_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWWN
NWWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
AT5G61620_col_a 		0.814 0.830
AT5G61620
M07150_2.00 		Arabidopsis thaliana
YHTTATCCAHW
WDTGGATAADR		 Dap-seq
OMalley et al.(2016)
AT5G61620_colamp_a 		0.814 0.830
AT1G19000
M02287_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Weirauch et al.(2014)
pTH7120 		0.808 0.809
AT1G19000
M07012_2.00 		Arabidopsis thaliana
HDYHTTATCCAHWW
WWDTGGATAADRHD		 Dap-seq
OMalley et al.(2016)
At1g19000_col_a 		0.808 0.809
AT1G19000
M07013_2.00 		Arabidopsis thaliana
WDYNTTATCCAHWW
WWDTGGATAANRHW		 Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a 		0.808 0.809
AT5G56840
M07144_2.00 		Arabidopsis thaliana
WWYMTTATCCAWWWN
NWWWTGGATAAKRWW		 Dap-seq
OMalley et al.(2016)
AT5G56840_col_a 		0.789 0.830
AT5G56840
M07145_2.00 		Arabidopsis thaliana
HHHWWYHTTATCCWHW
WDWGGATAADRWWDDD		 Dap-seq
OMalley et al.(2016)
AT5G56840_colamp_a 		0.789 0.830
0600010132
M02360_2.00 		Ostreococcus tauri
NNVTTATCCDNNN
NNNHGGATAABNN		 PBM
Weirauch et al.(2014)
pTH9441 		0.783 0.851
AT1G74840
M02291_2.00 		Arabidopsis thaliana
NGWTATCCRNN
NNYGGATAWCN		 PBM
Weirauch et al.(2014)
pTH7074 		0.712 0.830
AT1G74840
M07037_2.00 		Arabidopsis thaliana
HHTTATCCAHW
WDTGGATAADD		 Dap-seq
OMalley et al.(2016)
At1g74840_col100_a 		0.712 0.830
AT1G74840
M07038_2.00 		Arabidopsis thaliana
HWNHTTATCCAHWW
WWDTGGATAADNWD		 Dap-seq
OMalley et al.(2016)
At1g74840_colamp_a 		0.712 0.830
AT3G10580
M07072_2.00 		Arabidopsis thaliana
AWBCTTATCYWHWHH
DDWDWRGATAAGVWT		 Dap-seq
OMalley et al.(2016)
AT3G10580_col_a 		0.709 0.681
AT3G10580
M07073_2.00 		Arabidopsis thaliana
CCGAWAAWNTCGGDD
HHCCGANWTTWTCGG		 Dap-seq
OMalley et al.(2016)
AT3G10580_colamp_a 		0.709 0.681
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_800056.1 Myb 95 142

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

599 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NCU05411 Neurospora crassa NCU05411 D 0.000
TRIREDRAFT_70071 Trichoderma reesei TRIREDRAFT_70071 I 0.000
MAPG_08463 Magnaporthe poae MAPG_08463 I 0.000
MBR_06676 Metarhizium brunneum MBR_06676 I 0.000
MGU_09148 Metarhizium guizhouense MGU_09148 I 0.000
MYCTH_2312830 Myceliophthora thermophila MYCTH_2312830 I 0.000
NechaG98518 Fusarium solani NechaG98518 I 0.000
NEUTE1DRAFT_102079 Neurospora tetrasperma NEUTE1DRAFT_102079 I 0.000
SMAC_04150 Sordaria macrospora SMAC_04150 I 0.000
THITE_2124588 Thielavia terrestris THITE_2124588 I 0.000
TRIATDRAFT_290379 Trichoderma atroviride TRIATDRAFT_290379 I 0.000
MANI_019125 Metarhizium anisopliae MANI_019125 I 0.000
TRIVIDRAFT_163322 Trichoderma virens TRIVIDRAFT_163322 I 0.000
VDAG_07704 Verticillium dahliae VDAG_07704 I 0.000
VHEMI01959 Torrubiella hemipterigena VHEMI01959 I 0.000
X797_008956 Metarhizium robertsii X797_008956 I 0.000
estExt_fgenesh1_pg.C_sca_8_chr1_1_00138 Nectria haematococca estExt_fgenesh1_pg.C_sca_8_chr1_1_00138 I 0.000
estExt_Genewise1Plus.C_110569 Neurospora discreta estExt_Genewise1Plus.C_110569 I 0.000
estExt_Genewise1Plus.C_21651 Cryphonectria parasitica estExt_Genewise1Plus.C_21651 I 0.000
FFUJ_01862 Fusarium fujikuroi FFUJ_01862 I 0.000
ACRE_006880 Acremonium chrysogenum ACRE_006880 I 0.000
BBA_03452 Beauveria bassiana BBA_03452 I 0.000
CCM_02166 Cordyceps militaris CCM_02166 I 0.000
CFIO01_13633 Colletotrichum fioriniae CFIO01_13633 I 0.000
CGGC5_12854 Colletotrichum gloeosporioides CGGC5_12854 I 0.000
CH063_01030 Colletotrichum higginsianum CH063_01030 I 0.000
CPUR_06453 Claviceps purpurea CPUR_06453 I 0.000
F503_00471 Ophiostoma piceae uamh F503_00471 I 0.000
A1O1_06994 Capronia coronata A1O1_06994 I 0.000
FGRRES_01638 Fusarium graminearum FGRRES_01638 I 0.000
FOXG_11065 Fusarium oxysporum FOXG_11065 I 0.000
FVEG_09736 Fusarium verticillioides FVEG_09736 I 0.000
GGTG_04497 Gaeumannomyces graminis GGTG_04497 I 0.000
GLRG_10273 Colletotrichum graminicola GLRG_10273 I 0.000
MAC_05787 Metarhizium acridum MAC_05787 I 0.000
MAJ_07700 Metarhizium majus MAJ_07700 I 0.000
MAM_06565 Metarhizium album MAM_06565 I 0.000